6L6P | pdb_00006l6p

hASIC2a co-crystallized with Mamb-1

PDB DOI: https://doi.org/10.2210/pdb6L6P/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): No
Membrane Protein: Yes OPM PDBTM MemProtMD

Deposited: 2019-10-29 Released: 2020-11-04
Deposition Author(s): Lei, F., Jian, S.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.08 Å
R-Value Free:
0.282 (Depositor), 0.259 (DCC)
R-Value Work:
0.231 (Depositor)
R-Value Observed:
0.234 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6L6P

This is version 1.1 of the entry. See complete history.

Literature

hASIC2a co-crystallized with Mamb-1

Lei, F., Jian, S.

To be published.

Macromolecule Content

Total Structure Weight: 156.76 kDa
Atom Count: 10,369
Modeled Residue Count: 1,297
Deposited Residue Count: 1,389
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acid-sensing ion channel 2	A, B, C	463	Homo sapiens	Mutation(s): 0 Gene Names: ASIC2, ACCN, ACCN1, BNAC1, MDEG Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q16515 (Homo sapiens) Explore Q16515 Go to UniProtKB: Q16515
PHAROS: Q16515 GTEx: ENSG00000108684
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q16515
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.08 Å
R-Value Free: 0.282 (Depositor), 0.259 (DCC)
R-Value Work: 0.231 (Depositor)
R-Value Observed: 0.234 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 109.863	α = 90
b = 155.664	β = 90
c = 156.644	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-11-04

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	--

Revision History (Full details and data files)

Version 1.0: 2020-11-04
Type: Initial release
Version 1.1: 2024-11-20
Changes: Data collection, Database references, Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.