6L2B | pdb_00006l2b

Crystal structure of cyclophilin mutant I164M from Leishmania donovani at 2.65 angstrom resolution

PDB DOI: https://doi.org/10.2210/pdb6L2B/pdb

Classification: ISOMERASE
Organism(s): Leishmania donovani
Expression System: Escherichia coli M15
Mutation(s): Yes

Deposited: 2019-10-03 Released: 2019-10-23
Deposition Author(s): Ghosh, S., Biswas, G., Datta, A.K., Banerjee, R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free:
0.223 (Depositor), 0.231 (DCC)
R-Value Work:
0.177 (Depositor), 0.179 (DCC)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of cyclophilin mutant I164M from Leishmania donovani at 2.65 angstrom resolution.

Ghosh, S., Biswas, G., Datta, A.K., Banerjee, R.

To be published.

Macromolecule Content

Total Structure Weight: 19.11 kDa
Atom Count: 1,315
Modeled Residue Count: 166
Deposited Residue Count: 172
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-prolyl cis-trans isomerase	A	172	Leishmania donovani	Mutation(s): 1 Gene Names: CYP EC: 5.2.1.8
UniProt
Find proteins for Q9U9R3 (Leishmania donovani) Explore Q9U9R3 Go to UniProtKB: Q9U9R3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9U9R3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.223 (Depositor), 0.231 (DCC)
R-Value Work: 0.177 (Depositor), 0.179 (DCC)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.618	α = 90
b = 48.618	β = 90
c = 141.322	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
CrystalClear	data reduction
CrystalClear	data scaling
CrystalClear	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-10-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-10-23
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.