6KT1 | pdb_00006kt1

Crystal structure of an OspA mutant

PDB DOI: https://doi.org/10.2210/pdb6KT1/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Borreliella burgdorferi B31
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2019-08-26 Released: 2020-08-26
Deposition Author(s): Namioka, S., makabe, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.43 Å
R-Value Free:
0.208 (Depositor), 0.210 (DCC)
R-Value Work:
0.177 (Depositor), 0.181 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 6KT1

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of an OspA mutant

Namioka, S., Makabe, K.

To be published.

Macromolecule Content

Total Structure Weight: 25.88 kDa
Atom Count: 2,208
Modeled Residue Count: 246
Deposited Residue Count: 246
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer surface protein A	A [auth O]	246	Borreliella burgdorferi B31	Mutation(s): 15 Gene Names: ospA, BB_A15
UniProt
Find proteins for P0CL66 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)) Explore P0CL66 Go to UniProtKB: P0CL66
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0CL66
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.43 Å
R-Value Free: 0.208 (Depositor), 0.210 (DCC)
R-Value Work: 0.177 (Depositor), 0.181 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 33.074	α = 90
b = 54.285	β = 100.37
c = 66.19	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2020-08-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-08-26
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.