6KIR | pdb_00006kir

High resolution structure of mouse CXorf40A

PDB DOI: https://doi.org/10.2210/pdb6KIR/pdb

Classification: IMMUNE SYSTEM
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-07-19 Released: 2020-07-22
Deposition Author(s): Wu, B.X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free:
0.247 (Depositor), 0.213 (DCC)
R-Value Work:
0.181 (Depositor), 0.188 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 6KIR

This is version 1.1 of the entry. See complete history.

Literature

High resolution structure of mouse CXorf40A

Wu, B.X.

To be published.

Macromolecule Content

Total Structure Weight: 18.47 kDa
Atom Count: 1,401
Modeled Residue Count: 157
Deposited Residue Count: 160
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein CXorf40 homolog	A	160	Mus musculus	Mutation(s): 0
UniProt
Find proteins for Q9D1F3 (Mus musculus) Explore Q9D1F3 Go to UniProtKB: Q9D1F3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9D1F3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain B [auth A] Focus chain C [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.247 (Depositor), 0.213 (DCC)
R-Value Work: 0.181 (Depositor), 0.188 (DCC)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 33.252	α = 90
b = 50.943	β = 90
c = 96.292	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2020-07-22

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-07-22
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.