6KG8 | pdb_00006kg8

Solution structure of CaCohA2 from Clostridium acetobutylicum


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 6KG8

This is version 1.3 of the entry. See complete history

Literature

Discovery and mechanism of a pH-dependent dual-binding-site switch in the interaction of a pair of protein modules.

Yao, X.Chen, C.Wang, Y.Dong, S.Liu, Y.J.Li, Y.Cui, Z.Gong, W.Perrett, S.Yao, L.Lamed, R.Bayer, E.A.Cui, Q.Feng, Y.

(2020) Sci Adv 6

  • DOI: https://doi.org/10.1126/sciadv.abd7182
  • Primary Citation Related Structures: 
    6KG8, 6KG9, 6KGC, 6KGD, 6KGE, 6KGF

  • PubMed Abstract: 

    Many important proteins undergo pH-dependent conformational changes resulting in "on-off" switches for protein function, which are essential for regulation of life processes and have wide application potential. Here, we report a pair of cellulosomal assembly modules, comprising a cohesin and a dockerin from Clostridium acetobutylicum , which interact together following a unique pH-dependent switch between two functional sites rather than on-off states. The two cohesin-binding sites on the dockerin are switched from one to the other at pH 4.8 and 7.5 with a 180° rotation of the bound dockerin. Combined analysis by nuclear magnetic resonance spectroscopy, crystal structure determination, mutagenesis, and isothermal titration calorimetry elucidates the chemical and structural mechanism of the pH-dependent switching of the binding sites. The pH-dependent dual-binding-site switch not only represents an elegant example of biological regulation but also provides a new approach for developing pH-dependent protein devices and biomaterials beyond an on-off switch for biotechnological applications.


  • Organizational Affiliation
    • CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, Shandong 266101, China.

Macromolecule Content 

  • Total Structure Weight: 16.03 kDa 
  • Atom Count: 1,125 
  • Modeled Residue Count: 155 
  • Deposited Residue Count: 155 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Probably cellulosomal scaffolding protein, secreted cellulose-binding and cohesin domain155Clostridium acetobutylicum ATCC 824Mutation(s): 0 
Gene Names: CA_C0910
UniProt
Find proteins for Q977Y4 (Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W))
Explore Q977Y4 
Go to UniProtKB:  Q977Y4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ977Y4
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31270784
National Natural Science Foundation of ChinaChina31670735

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-08
    Type: Initial release
  • Version 1.1: 2020-11-04
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Database references, Other
  • Version 1.3: 2024-05-15
    Changes: Data collection, Database references