6KD6 | pdb_00006kd6

Shuguo PWWP domain

PDB DOI: https://doi.org/10.2210/pdb6KD6/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Drosophila melanogaster
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-07-01 Released: 2020-07-01
Deposition Author(s): Liu, Y.C., Huang, Y.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.58 Å
R-Value Free:
0.214 (Depositor), 0.217 (DCC)
R-Value Work:
0.177 (Depositor), 0.177 (DCC)
R-Value Observed:
0.178 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Shuguo PWWP domain

Liu, Y.C., Huang, Y.

To be published.

Macromolecule Content

Total Structure Weight: 38.63 kDa
Atom Count: 3,128
Modeled Residue Count: 325
Deposited Residue Count: 340
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LD23804p	A, B, C, D	85	Drosophila melanogaster	Mutation(s): 0 Gene Names: Dmel\CG7946, CG7946, Dmel_CG7946
UniProt
Find proteins for Q9VAA9 (Drosophila melanogaster) Explore Q9VAA9 Go to UniProtKB: Q9VAA9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9VAA9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.58 Å
R-Value Free: 0.214 (Depositor), 0.217 (DCC)
R-Value Work: 0.177 (Depositor), 0.177 (DCC)
R-Value Observed: 0.178 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.869	α = 90
b = 51.126	β = 93.5
c = 58.726	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-07-01

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31870741
National Natural Science Foundation of China	China	91640102

Revision History (Full details and data files)

Version 1.0: 2020-07-01
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.