6K5S | pdb_00006k5s

Crystal structure of the Helical domain of S. pombe Tbf1

PDB DOI: https://doi.org/10.2210/pdb6K5S/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Schizosaccharomyces pombe 972h-
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-05-31 Released: 2020-06-03
Deposition Author(s): Zhou, Y.Z., Wang, N.N., Zhao, Y.C., Zeng, Z.X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.275 (Depositor), 0.274 (DCC)
R-Value Work:
0.221 (Depositor), 0.222 (DCC)
R-Value Observed:
0.224 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6K5S

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the Helical domain of S. pombe Tbf1

Zhou, Y.Z., Wang, N.N., Zhao, Y.C., Zeng, Z.X.

To be published.

Macromolecule Content

Total Structure Weight: 102.08 kDa
Atom Count: 7,380
Modeled Residue Count: 870
Deposited Residue Count: 908
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Telomeric DNA-binding factor trf1	A, B, C, D	227	Schizosaccharomyces pombe 972h-	Mutation(s): 0 Gene Names: trf1, SPBC19G7.13
UniProt
Find proteins for Q6E434 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore Q6E434 Go to UniProtKB: Q6E434
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6E434
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.275 (Depositor), 0.274 (DCC)
R-Value Work: 0.221 (Depositor), 0.222 (DCC)
R-Value Observed: 0.224 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.498	α = 111.45
b = 80.639	β = 94.64
c = 77.367	γ = 92.05

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data scaling
SOLVE	phasing
PDB_EXTRACT	data extraction
HKL-3000	data reduction

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2020-06-03

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-06-03
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.