6K15

RSC substrate-recruitment module


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the RSC complex bound to the nucleosome.

Ye, Y.Wu, H.Chen, K.Clapier, C.R.Verma, N.Zhang, W.Deng, H.Cairns, B.R.Gao, N.Chen, Z.

(2019) Science 366: 838-843

  • DOI: https://doi.org/10.1126/science.aay0033
  • Primary Citation of Related Structures:  
    6K15, 6KW3, 6KW4

  • PubMed Abstract: 

    The RSC complex remodels chromatin structure and regulates gene transcription. We used cryo-electron microscopy to determine the structure of yeast RSC bound to the nucleosome. RSC is delineated into the adenosine triphosphatase motor, the actin-related protein module, and the substrate recruitment module (SRM). RSC binds the nucleosome mainly through the motor, with the auxiliary subunit Sfh1 engaging the H2A-H2B acidic patch to enable nucleosome ejection. SRM is organized into three substrate-binding lobes poised to bind their respective nucleosomal epitopes. The relative orientations of the SRM and the motor on the nucleosome explain the directionality of DNA translocation and promoter nucleosome repositioning by RSC. Our findings shed light on RSC assembly and functionality, and they provide a framework to understand the mammalian homologs BAF/PBAF and the Sfh1 ortholog INI1/BAF47, which are frequently mutated in cancers.


  • Organizational Affiliation

    MOE Key Laboratory of Protein Science, Tsinghua University, Beijing 100084, P.R. China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex subunit RSC7A [auth F]435Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex protein RSC8B [auth H],
C [auth D]
557Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
Find proteins for P43609 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex subunit RSC9D [auth M]581Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex protein RSC6E [auth I]483Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex subunit SFH1F [auth G]426Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex protein RSC58G [auth A]502Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Nuclear protein STH1/NPS1H [auth J]1,359Saccharomyces cerevisiae S288CMutation(s): 0 
EC: 3.6.4.12
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
High temperature lethal protein 1I [auth E]78Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex protein RSC30J [auth C]883Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex protein RSC3885Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex subunit RSC4L [auth X]625Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex subunit RSC2M [auth L]889Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN (Subject of Investigation/LOI)
Query on ZN

Download Ideal Coordinates CCD File 
N [auth H]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-13
    Type: Initial release
  • Version 1.1: 2019-11-27
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references