6JZO

Structure of the mouse TRPC4 ion channel

PDB DOI: https://doi.org/10.2210/pdb6JZO/pdb
EM Map EMD-9898: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Mus musculus
Expression System: Spodoptera frugiperda
Mutation(s): No
Membrane Protein: Yes PDBTMMemProtMD

Deposited: 2019-05-03 Released: 2020-10-21
Deposition Author(s): Duan, J., Li, Z., Li, J., Zhang, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.28 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of the mouse TRPC4 ion channel

Duan, J., Li, J., Zeng, B., Chen, G., Peng, X., Zhang, Y., Wang, J., Clapham, D.E., Li, Z., Zhang, J.

To be published.

Macromolecule Content

Total Structure Weight: 354.88 kDa
Atom Count: 21,405
Modelled Residue Count: 2,657
Deposited Residue Count: 3,020
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Short transient receptor potential channel 4	A, B, C, D	755	Mus musculus	Mutation(s): 0 Gene Names: Trpc4, Trrp4 Membrane Entity: Yes
UniProt
Find proteins for Q9QUQ5 (Mus musculus) Explore Q9QUQ5 Go to UniProtKB: Q9QUQ5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9QUQ5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
LPP (Subject of Investigation/LOI) Query on LPP Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain O [auth D] SDF format, chain F [auth A] SDF format, chain L [auth C] MOL2 format, chain G [auth A] MOL2 format, chain O [auth D] MOL2 format, chain F [auth A] MOL2 format, chain L [auth C] mmCIF format, chain G [auth A] mmCIF format, chain O [auth D] mmCIF format, chain F [auth A] mmCIF format, chain L [auth C]	F [auth A], G [auth A], L [auth C], O [auth D]	2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE C₃₅ H₆₉ O₈ P PORPENFLTBBHSG-MGBGTMOVSA-N		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain L [auth C] Focus chain O [auth D] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain L [auth C] Focus chain O [auth D]
Y01 (Subject of Investigation/LOI) Query on Y01 Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain I [auth B] SDF format, chain K [auth C] SDF format, chain N [auth D] MOL2 format, chain E [auth A] MOL2 format, chain I [auth B] MOL2 format, chain K [auth C] MOL2 format, chain N [auth D] mmCIF format, chain E [auth A] mmCIF format, chain I [auth B] mmCIF format, chain K [auth C] mmCIF format, chain N [auth D]	E [auth A], I [auth B], K [auth C], N [auth D]	CHOLESTEROL HEMISUCCINATE C₃₁ H₅₀ O₄ WLNARFZDISHUGS-MIXBDBMTSA-N		Interactions Focus chain E [auth A] Focus chain I [auth B] Focus chain K [auth C] Focus chain N [auth D] Interactions & Density Focus chain E [auth A] Focus chain I [auth B] Focus chain K [auth C] Focus chain N [auth D]
NA (Subject of Investigation/LOI) Query on NA Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain M [auth C] SDF format, chain P [auth D] SDF format, chain J [auth B] MOL2 format, chain H [auth A] MOL2 format, chain M [auth C] MOL2 format, chain P [auth D] MOL2 format, chain J [auth B] mmCIF format, chain H [auth A] mmCIF format, chain M [auth C] mmCIF format, chain P [auth D] mmCIF format, chain J [auth B]	H [auth A], J [auth B], M [auth C], P [auth D]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain J [auth B] Focus chain M [auth C] Focus chain P [auth D] Interactions & Density Focus chain H [auth A] Focus chain J [auth B] Focus chain M [auth C] Focus chain P [auth D]