Download MendeleyThe intermediate forming O-C10 bond formation in AsqJ-catalyzed epoxidation
Liao, H.J., Chan, N.L.(2020) J Am Chem Soc
6JZM
The intermediate forming O-C10 bond formation in AsqJ-catalyzed epoxidation
- PDB DOI: https://doi.org/10.2210/pdb6JZM/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Aspergillus nidulans FGSC A4
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2019-05-02 Released: 2020-03-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.214
- R-Value Work: 0.171
- R-Value Observed: 0.175
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Iron/alpha-ketoglutarate-dependent dioxygenase asqJ | A [auth B] | 308 | Aspergillus nidulans FGSC A4 | Mutation(s): 0 Gene Names: asqJ, AN9227 EC: 1.14 (PDB Primary Data), 1.14.11.81 (UniProt) |  |
UniProt | |||||
Find proteins for Q5AR53 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)) Explore Q5AR53 Go to UniProtKB: Q5AR53 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5AR53 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CQ9 (Subject of Investigation/LOI) Query on CQ9 | D [auth B] | (3~{R},3'~{S})-4-methyl-3'-phenyl-spiro[1~{H}-1,4-benzodiazepine-3,2'-oxirane]-2,5-dione C17 H14 N2 O3 APLKWZASYUZSBL-WMLDXEAASA-N |  | ||
| SIN Query on SIN | C [auth B] | SUCCINIC ACID C4 H6 O4 KDYFGRWQOYBRFD-UHFFFAOYSA-N |  | ||
| FE Query on FE | B | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 Å
- R-Value Free: 0.214
- R-Value Work: 0.171
- R-Value Observed: 0.175
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 74.147 | α = 90 |
| b = 121.805 | β = 90 |
| c = 66.617 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2020-03-18 Deposition Author(s): Liao, H.J., Chan, N.L.
Revision History (Full details and data files)
- Version 1.0: 2020-03-18
Type: Initial release - Version 1.1: 2024-03-27
Changes: Data collection, Database references
