6JTI

Crystal structure of native NagZ from Neisseria gonorrhoeae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.215 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of native NagZ from Neisseria gonorrhoeae

Chen, Y.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-hexosaminidase
A, B, C, D, E
A, B, C, D, E, F
397Neisseria gonorrhoeaeMutation(s): 0 
Gene Names: nagZNGO0135
EC: 3.2.1.52
UniProt
Find proteins for Q5FA94 (Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090))
Explore Q5FA94 
Go to UniProtKB:  Q5FA94
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5FA94
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.215 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 102.017α = 90
b = 124.088β = 90
c = 189.92γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
HKL-3000data scaling
PHENIXphasing
REFMACrefinement

Structure Validation

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Entry History 

Deposition Data

  • Released Date: 2020-05-13 
  • Deposition Author(s): Chen, Y.

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-13
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Refinement description