6JJ9
Crystal structure of OsHXK6-Glc-ATP-Mg2+ complex
- PDB DOI: https://doi.org/10.2210/pdb6JJ9/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Oryza sativa Japonica Group
- Expression System: Oryza sativa
- Mutation(s): No 
- Deposited: 2019-02-25 Released: 2019-07-03 
- Funding Organization(s): National Natural Science Foundation of China
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.242 
- R-Value Work: 0.206 
- R-Value Observed: 0.208 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Hexokinase-6 | A [auth C], B [auth A], C [auth E] | 465 | Oryza sativa Japonica Group | Mutation(s): 0  Gene Names: HXK6, HXK2, Os01g0742500, LOC_Os01g53930, P0439E07.19 EC: 2.7.1.1 | |
UniProt | |||||
Find proteins for Q8LQ68 (Oryza sativa subsp. japonica) Explore Q8LQ68  Go to UniProtKB:  Q8LQ68 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8LQ68 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP Query on ADP | D [auth C], H [auth A], L [auth E] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
BGC Query on BGC | G [auth C], K [auth A], O [auth E] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N | |||
PO4 Query on PO4 | E [auth C], I [auth A], M [auth E] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
MG Query on MG | F [auth C], J [auth A], N [auth E] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.242 
- R-Value Work: 0.206 
- R-Value Observed: 0.208 
- Space Group: P 32 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 131.12 | α = 90 |
b = 131.12 | β = 90 |
c = 186.192 | γ = 120 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
MOSFLM | data reduction |
Aimless | data scaling |
PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-07-03  Deposition Author(s): He, C., Wei, P., Chen, J., Wang, H., Wan, Y., Zhou, J., Zhu, Y., Huang, W., Yin, L.
Funding Organization | Location | Grant Number |
---|---|---|
National Natural Science Foundation of China | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2019-07-03
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.2: 2023-11-22
Changes: Data collection, Database references, Refinement description, Structure summary