6JJ4 | pdb_00006jj4

Crystal structure of OsHXK6-apo form

• PDB DOI: https://doi.org/10.2210/pdb6JJ4/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Oryza sativa Japonica Group
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2019-02-25 Released: 2019-07-03 
• Deposition Author(s): He, C., Wei, P., Chen, J., Wang, H., Wan, Y., Zhou, J., Zhu, Y., Huang, W., Yin, L.
• Funding Organization(s): National Natural Science Foundation of China

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.319 (Depositor), 0.298 (DCC) 
• R-Value Work: 
  0.250 (Depositor), 0.248 (DCC) 
• R-Value Observed: 
  0.257 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of OsHXK6-apo

He, C., Wei, P., Chen, J., Wang, H., Wan, Y., Zhou, J., Zhu, Y., Huang, W., Yin, L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: native gel electrophoresis

Macromolecule Content 

• Total Structure Weight: 51.29 kDa 
• Atom Count: 3,539 
• Modeled Residue Count: 455 
• Deposited Residue Count: 467 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hexokinase-6	A	467	Oryza sativa Japonica Group	Mutation(s): 0  Gene Names: HXK6, HXK2, Os01g0742500, LOC_Os01g53930, P0439E07.19 EC: 2.7.1.1
UniProt
Find proteins for Q8LQ68 (Oryza sativa subsp. japonica) Explore Q8LQ68  Go to UniProtKB:  Q8LQ68

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.319 (Depositor), 0.298 (DCC) 
• R-Value Work:  0.250 (Depositor), 0.248 (DCC) 
• R-Value Observed: 0.257 (Depositor) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.89	α = 90
b = 65.89	β = 90
c = 170.621	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2019-07-03 
Deposition Author(s): He, C., Wei, P., Chen, J., Wang, H., Wan, Y., Zhou, J., Zhu, Y., Huang, W., Yin, L.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31870728 and 31470738

Revision History  

• Version 1.0: 2019-07-03
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description