6JG0 | pdb_00006jg0

Crystal structure of the N-terminal domain single mutant (S92E) of the human mitochondrial calcium uniporter fused with T4 lysozyme

PDB DOI: https://doi.org/10.2210/pdb6JG0/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Tequatrovirus T4, Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2019-02-13 Released: 2020-02-19
Deposition Author(s): Lee, Y., Park, J., Min, C.K., Kang, J.Y., Kim, T.G., Yamamoto, T., Kim, D.H., Eom, S.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.259 (Depositor), 0.251 (DCC)
R-Value Work:
0.188 (Depositor), 0.192 (DCC)
R-Value Observed:
0.192 (Depositor)

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of calcium channel domain

Lee, Y., Park, J., Min, C.K., Kang, J.Y., Kim, T.G., Yamamoto, T., Kim, D.H., Eom, S.H.

To be published.

Macromolecule Content

Total Structure Weight: 30.02 kDa
Atom Count: 2,098
Modeled Residue Count: 253
Deposited Residue Count: 262
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endolysin,Calcium uniporter protein	A	262	Tequatrovirus T4, Homo sapiens This entity is chimeric	Mutation(s): 4 Gene Names: e, T4Tp126, MCU, C10orf42, CCDC109A EC: 3.2.1.17
UniProt & NIH Common Fund Data Resources
Find proteins for D9IEF7 (Enterobacteria phage T4) Explore D9IEF7 Go to UniProtKB: D9IEF7
Find proteins for Q8NE86 (Homo sapiens) Explore Q8NE86 Go to UniProtKB: Q8NE86
PHAROS: Q8NE86 GTEx: ENSG00000156026
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	D9IEF7 Q8NE86
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain B [auth A] Focus chain C [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.259 (Depositor), 0.251 (DCC)
R-Value Work: 0.188 (Depositor), 0.192 (DCC)
R-Value Observed: 0.192 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 97.943	α = 90
b = 97.943	β = 90
c = 61.514	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2020-02-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-02-19
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.