6JBJ

Cryo-EM structure of human lysosomal cobalamin exporter ABCD4


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Cryo-EM structure of human lysosomal cobalamin exporter ABCD4.

Xu, D.Feng, Z.Hou, W.T.Jiang, Y.L.Wang, L.Sun, L.Zhou, C.Z.Chen, Y.

(2019) Cell Res 29: 1039-1041


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-binding cassette sub-family D member 4
A, B
648Homo sapiensMutation(s): 1 
Gene Names: ABCD4PXMP1L
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O14678 (Homo sapiens)
Explore O14678 
Go to UniProtKB:  O14678
PHAROS:  O14678
GTEx:  ENSG00000119688 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14678
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download Ideal Coordinates CCD File 
C [auth A],
D [auth B]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (China)China2015CB910103
Chinese Academy of SciencesChinaXDB08020304
National Natural Science Foundation of ChinaChina31621002

Revision History  (Full details and data files)

  • Version 1.0: 2019-09-11
    Type: Initial release
  • Version 1.1: 2019-12-18
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references