6IRR | pdb_00006irr

Solution structure of DISC1/ATF4 complex


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 43 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 6IRR

This is version 1.2 of the entry. See complete history

Literature

Structural interaction between DISC1 and ATF4 underlying transcriptional and synaptic dysregulation in an iPSC model of mental disorders.

Wang, X.Ye, F.Wen, Z.Guo, Z.Yu, C.Huang, W.K.Rojas Ringeling, F.Su, Y.Zheng, W.Zhou, G.Christian, K.M.Song, H.Zhang, M.Ming, G.L.

(2019) Mol Psychiatry 

  • DOI: https://doi.org/10.1038/s41380-019-0485-2
  • Primary Citation Related Structures: 
    6IRR

  • PubMed Abstract: 

    Psychiatric disorders are a collection of heterogeneous mental disorders arising from a contribution of genetic and environmental insults, many of which molecularly converge on transcriptional dysregulation, resulting in altered synaptic functions. The underlying mechanisms linking the genetic lesion and functional phenotypes remain largely unknown. Patient iPSC-derived neurons with a rare frameshift DISC1 (Disrupted-in-schizophrenia 1) mutation have previously been shown to exhibit aberrant gene expression and deficits in synaptic functions. How DISC1 regulates gene expression is largely unknown. Here we show that Activating Transcription Factor 4 (ATF4), a DISC1 binding partner, is more abundant in the nucleus of DISC1 mutant human neurons and exhibits enhanced binding to a collection of dysregulated genes. Functionally, overexpressing ATF4 in control neurons recapitulates deficits seen in DISC1 mutant neurons, whereas transcriptional and synaptic deficits are rescued in DISC1 mutant neurons with CRISPR-mediated heterozygous ATF4 knockout. By solving the high-resolution atomic structure of the DISC1-ATF4 complex, we show that mechanistically, the mutation of DISC1 disrupts normal DISC1-ATF4 interaction, and results in excessive ATF4 binding to DNA targets and deregulated gene expression. Together, our study identifies the molecular and structural basis of an DISC1-ATF4 interaction underlying transcriptional and synaptic dysregulation in an iPSC model of mental disorders.


  • Organizational Affiliation
    • School of Basic Medical Sciences, Fudan University, 200032, Shanghai, China.

Macromolecule Content 

  • Total Structure Weight: 14.57 kDa 
  • Atom Count: 1,022 
  • Modeled Residue Count: 133 
  • Deposited Residue Count: 133 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Disrupted in schizophrenia 1 homolog,Cyclic AMP-dependent transcription factor ATF-4133Mus musculusMutation(s): 0 
Gene Names: Disc1Atf4
UniProt & NIH Common Fund Data Resources
Find proteins for Q06507 (Mus musculus)
Explore Q06507 
Go to UniProtKB:  Q06507
IMPC:  MGI:88096
Find proteins for Q811T9 (Mus musculus)
Explore Q811T9 
Go to UniProtKB:  Q811T9
IMPC:  MGI:2447658
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ06507Q811T9
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 43 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Hong Kong16104518

Revision History  (Full details and data files)

  • Version 1.0: 2019-09-25
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Database references, Other
  • Version 1.2: 2024-05-15
    Changes: Data collection, Database references