6IFH

Unphosphorylated Spo0F from Paenisporosarcina sp. TG-14

PDB DOI: https://doi.org/10.2210/pdb6IFH/pdb

Classification: TRANSFERASE
Organism(s): Paenisporosarcina sp. TG-14
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-09-20 Released: 2019-01-16
Deposition Author(s): Lee, J.H., Lee, C.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.226
R-Value Work: 0.188
R-Value Observed: 0.189

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of unphosphorylated Spo0F from Paenisporosarcina sp. TG-14, a psychrophilic bacterium isolated from an Antarctic glacier

Lee, C.W., Park, S.H., Jeong, C., Lee, C.S., Hong, J.W., Park, H.H., Park, H., Park, H.J., Lee, J.H.

(2019) Korean Soc Struct Biology 6(4): 84-91

Macromolecule Content

Total Structure Weight: 13.58 kDa
Atom Count: 991
Modelled Residue Count: 119
Deposited Residue Count: 119
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sporulation initiation phosphotransferase F	A	119	Paenisporosarcina sp. TG-14	Mutation(s): 0
UniProt
Find proteins for A0A4V8GZZ1 (Paenisporosarcina sp. TG-14) Explore A0A4V8GZZ1 Go to UniProtKB: A0A4V8GZZ1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A4V8GZZ1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.226
R-Value Work: 0.188
R-Value Observed: 0.189
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.518	α = 90
b = 49.361	β = 90
c = 67.067	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MxDC	data collection

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-01-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-01-16
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.