6I9H | pdb_00006i9h

Solution structure of TRIM28 RING domain


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 18 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 6I9H

This is version 1.3 of the entry. See complete history

Literature

Characterisation of class VI TRIM RING domains: linking RING activity to C-terminal domain identity.

Stevens, R.V.Esposito, D.Rittinger, K.

(2019) Life Sci Alliance 2

  • DOI: https://doi.org/10.26508/lsa.201900295
  • Primary Citation Related Structures: 
    6I9H

  • PubMed Abstract: 

    TRIM E3 ubiquitin ligases regulate multiple cellular processes, and their dysfunction is linked to disease. They are characterised by a conserved N-terminal tripartite motif comprising a RING, B-box domains, and a coiled-coil region, with C-terminal domains often mediating substrate recruitment. TRIM proteins are grouped into 11 classes based on C-terminal domain identity. Class VI TRIMs, TRIM24, TRIM33, and TRIM28, have been described as transcriptional regulators, a function linked to their C-terminal plant homeodomain and bromodomain, and independent of their ubiquitination activity. It is unclear whether E3 ligase activity is regulated in family members where the C-terminal domains function independently. Here, we provide a detailed biochemical characterisation of the RING domains of class VI TRIMs and describe the solution structure of the TRIM28 RING. Our study reveals a lack of activity of the isolated RING domains, which may be linked to the absence of self-association. We propose that class VI TRIMs exist in an inactive state and require additional regulatory events to stimulate E3 ligase activity, ensuring that associated chromatin-remodelling factors are not injudiciously degraded.


  • Organizational Affiliation
    • Molecular Structure of Cell Signalling Laboratory, The Francis Crick Institute, London, UK.

Macromolecule Content 

  • Total Structure Weight: 9.81 kDa 
  • Atom Count: 661 
  • Modeled Residue Count: 92 
  • Deposited Residue Count: 94 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Transcription intermediary factor 1-beta94Homo sapiensMutation(s): 0 
Gene Names: TRIM28KAP1RNF96TIF1B
EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q13263 (Homo sapiens)
Explore Q13263 
Go to UniProtKB:  Q13263
PHAROS:  Q13263
GTEx:  ENSG00000130726 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13263
Sequence Annotations
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Reference Sequence

Small Molecules

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 18 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
The Francis Crick InstituteUnited KingdomFC001142

Revision History  (Full details and data files)

  • Version 1.0: 2019-05-01
    Type: Initial release
  • Version 1.1: 2019-05-08
    Changes: Data collection, Database references
  • Version 1.2: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.3: 2024-06-19
    Changes: Data collection, Database references