Structural insights in human glycine decarboxylase and comparison with the Neanderthal variant
Van Laer, B., Kapp, U., Signor, L., Leonard, G., Mueller-Dieckmann, C.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glycine dehydrogenase (decarboxylating), mitochondrial | 984 | Homo sapiens | Mutation(s): 0  Gene Names: GLDC, GCSP EC: 1.4.4.2 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P23378 (Homo sapiens) Explore P23378  Go to UniProtKB:  P23378 | |||||
PHAROS:  P23378 GTEx:  ENSG00000178445  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P23378 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PLG (Subject of Investigation/LOI) Query on PLG | E [auth A], L [auth B], N [auth C], T [auth D] | N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] C10 H15 N2 O7 P FEVQWBMNLWUBTF-UHFFFAOYSA-N | |||
PEG Query on PEG | K [auth B], Q [auth C], S [auth C], V [auth D] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
GOL Query on GOL | G [auth A], H [auth A], M [auth B], P [auth C], R [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
EDO Query on EDO | F [auth A], J [auth B], O [auth C], U [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
BCT Query on BCT | I [auth A] | BICARBONATE ION C H O3 BVKZGUZCCUSVTD-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 85.66 | α = 90 |
b = 123.44 | β = 97.93 |
c = 197.67 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |