6HTL | pdb_00006htl

Measles Phosphoprotein Coiled-Coil Domain IPKI Variant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 
    0.285 (Depositor), 0.320 (DCC) 
  • R-Value Work: 
    0.252 (Depositor), 0.263 (DCC) 
  • R-Value Observed: 
    0.254 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Regulation of measles virus gene expression by P protein coiled-coil properties.

Bloyet, L.M.Schramm, A.Lazert, C.Raynal, B.Hologne, M.Walker, O.Longhi, S.Gerlier, D.

(2019) Sci Adv 5: eaaw3702-eaaw3702

  • DOI: https://doi.org/10.1126/sciadv.aaw3702
  • Primary Citation Related Structures: 
    6HTL

  • PubMed Abstract: 

    The polymerase of negative-stranded RNA viruses consists of the large protein (L) and the phosphoprotein (P), the latter serving both as a chaperon and a cofactor for L. We mapped within measles virus (MeV) P the regions responsible for binding and stabilizing L and showed that the coiled-coil multimerization domain (MD) of P is required for gene expression. MeV MD is kinked as a result of the presence of a stammer. Both restoration of the heptad regularity and displacement of the stammer strongly decrease or abrogate activity in a minigenome assay. By contrast, P activity is rather tolerant of substitutions within the stammer. Single substitutions at the "a" or "d" hydrophobic anchor positions with residues of variable hydrophobicity revealed that P functionality requires a narrow range of cohesiveness of its MD. Results collectively indicate that, beyond merely ensuring P oligomerization, the MD finely tunes viral gene expression through its cohesiveness.


  • Organizational Affiliation
    • CIRI, International Center for Infectiology Research, INSERM, U1111, Université Claude Bernard Lyon 1, CNRS, UMR5308, Ecole Normale Supérieure de Lyon, Univ Lyon, Lyon, France.

Macromolecule Content 

  • Total Structure Weight: 8.97 kDa 
  • Atom Count: 527 
  • Modeled Residue Count: 64 
  • Deposited Residue Count: 78 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Phosphoprotein78Measles morbillivirusMutation(s): 4 
UniProt
Find proteins for Q83623 (Measles virus (strain Edmonston B))
Explore Q83623 
Go to UniProtKB:  Q83623
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ83623
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CA

Query on CA



Download:Ideal Coordinates CCD File
B [auth A]CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free:  0.285 (Depositor), 0.320 (DCC) 
  • R-Value Work:  0.252 (Depositor), 0.263 (DCC) 
  • R-Value Observed: 0.254 (Depositor) 
Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 33.45α = 90
b = 33.45β = 90
c = 275.62γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing
PDB_EXTRACTdata extraction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-06-05
    Type: Initial release
  • Version 1.1: 2024-01-24
    Changes: Data collection, Database references, Derived calculations, Refinement description