6HSU | pdb_00006hsu

The crystal structure of type II Dehydroquinase from Psychromonas ingrahamii 37, crystal form 2

PDB DOI: https://doi.org/10.2210/pdb6HSU/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Psychromonas ingrahamii 37
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-10-01 Released: 2019-10-23
Deposition Author(s): Lapthorn, A.J., Roszak, A.W.
Funding Organization(s): Engineering and Physical Sciences Research Council

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.208 (Depositor), 0.218 (DCC)
R-Value Work:
0.191 (Depositor)
R-Value Observed:
0.192 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of type II Dehydroquinase from Psychromonas ingrahamii 37

Lapthorn, A.J., Koyroytsaltis-McQuire, D., Roszak, A.W.

To be published.

Macromolecule Content

Total Structure Weight: 203.74 kDa
Atom Count: 15,740
Modeled Residue Count: 1,802
Deposited Residue Count: 1,824
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-dehydroquinate dehydratase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	152	Psychromonas ingrahamii 37	Mutation(s): 0 Gene Names: aroQ, Ping_3121 EC: 4.2.1.10
UniProt
Find proteins for A1SZA3 (Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)) Explore A1SZA3 Go to UniProtKB: A1SZA3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A1SZA3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MPO Query on MPO Download:Ideal Coordinates CCD File SDF format, chain Y [auth K] MOL2 format, chain Y [auth K] mmCIF format, chain Y [auth K]	Y [auth K]	3[N-MORPHOLINO]PROPANE SULFONIC ACID C₇ H₁₅ N O₄ S DVLFYONBTKHTER-UHFFFAOYSA-N		Interactions Focus chain Y [auth K] Interactions & Density Focus chain Y [auth K]
TLA Query on TLA Download:Ideal Coordinates CCD File SDF format, chain R [auth E] SDF format, chain T [auth G] SDF format, chain U [auth H] SDF format, chain Z [auth L] SDF format, chain X [auth K] SDF format, chain W [auth J] SDF format, chain V [auth I] SDF format, chain S [auth F] SDF format, chain Q [auth D] SDF format, chain P [auth C] SDF format, chain N [auth B] SDF format, chain M [auth A] MOL2 format, chain R [auth E] MOL2 format, chain T [auth G] MOL2 format, chain U [auth H] MOL2 format, chain Z [auth L] MOL2 format, chain X [auth K] MOL2 format, chain W [auth J] MOL2 format, chain V [auth I] MOL2 format, chain S [auth F] MOL2 format, chain Q [auth D] MOL2 format, chain P [auth C] MOL2 format, chain N [auth B] MOL2 format, chain M [auth A] mmCIF format, chain R [auth E] mmCIF format, chain T [auth G] mmCIF format, chain U [auth H] mmCIF format, chain Z [auth L] mmCIF format, chain X [auth K] mmCIF format, chain W [auth J] mmCIF format, chain V [auth I] mmCIF format, chain S [auth F] mmCIF format, chain Q [auth D] mmCIF format, chain P [auth C] mmCIF format, chain N [auth B] mmCIF format, chain M [auth A]	M [auth A] N [auth B] P [auth C] Q [auth D] R [auth E] M [auth A], N [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], T [auth G], U [auth H], V [auth I], W [auth J], X [auth K], Z [auth L]	L(+)-TARTARIC ACID C₄ H₆ O₆ FEWJPZIEWOKRBE-JCYAYHJZSA-N		Interactions Focus chain M [auth A] Focus chain N [auth B] Focus chain P [auth C] Focus chain Q [auth D] Focus chain R [auth E] Focus chain S [auth F] Focus chain T [auth G] Focus chain U [auth H] Focus chain V [auth I] Focus chain W [auth J] Focus chain X [auth K] Focus chain Z [auth L] Interactions & Density Focus chain M [auth A] Focus chain N [auth B] Focus chain P [auth C] Focus chain Q [auth D] Focus chain R [auth E] Focus chain S [auth F] Focus chain T [auth G] Focus chain U [auth H] Focus chain V [auth I] Focus chain W [auth J] Focus chain X [auth K] Focus chain Z [auth L]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain O [auth B] MOL2 format, chain O [auth B] mmCIF format, chain O [auth B]	O [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain O [auth B] Interactions & Density Focus chain O [auth B]