6HIV

Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history. 


Literature

Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.

Ramrath, D.J.F., Niemann, M., Leibundgut, M., Bieri, P., Prange, C., Horn, E.K., Leitner, A., Boehringer, D., Schneider, A., Ban, N.

(2018) Science 362

  • DOI: https://doi.org/10.1126/science.aau7735
  • Primary Citation of Related Structures:  
    6HIV, 6HIW, 6HIX, 6HIY, 6HIZ

  • PubMed Abstract: 

    Ribosomal RNA (rRNA) plays key functional and architectural roles in ribosomes. Using electron microscopy, we determined the atomic structure of a highly divergent ribosome found in mitochondria of Trypanosoma brucei , a unicellular parasite that causes sleeping sickness in humans. The trypanosomal mitoribosome features the smallest rRNAs and contains more proteins than all known ribosomes. The structure shows how the proteins have taken over the role of architectural scaffold from the rRNA: They form an autonomous outer shell that surrounds the entire particle and stabilizes and positions the functionally important regions of the rRNA. Our results also reveal the "minimal" set of conserved rRNA and protein components shared by all ribosomes that help us define the most essential functional elements.

    • Organizational Affiliation: 

    Department of Biology, Institute of Molecular Biology and Biophysics, Otto-Stern-Weg 5, ETH Zurich, CH-8093 Zurich, Switzerland.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ms48A [auth DA]1,788Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.5200
UniProt
Find proteins for Q57UJ2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ms51B [auth DD]812Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.02.3180
UniProt
Find proteins for Q385L8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ms56C [auth DI]407Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.4560
UniProt
Find proteins for Q587C2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ms59D [auth DL]307Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.4220
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Find proteins for Q38BS2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
ms60E [auth DM]294Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VII2960
UniProt
Find proteins for C9ZSF8 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ms61F [auth DN]293Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.211.4510
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Find proteins for Q38D60 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ms62G [auth DO]282Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.3300
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ms63H [auth DP]274Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.160.3800
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
ms64I [auth DQ]268Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.5460
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Find proteins for Q382E8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
ms65J [auth DR]270Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_V5090
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
ms66K [auth DS]261Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.61.3110
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
ms68L [auth DU]228Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_III2230
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
ms73M [auth DZ]94Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.4580
UniProt
Find proteins for Q587C4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
ms74N [auth Da]64Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_X9770
UniProt
Find proteins for D0A3P2 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
ms49O [auth DB]1,181Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_II2470
UniProt
Find proteins for C9ZJE4 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
ms50P [auth DC]1,165Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VII3350
UniProt
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
mS52Q [auth DE]746Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q386Q7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
ms53R [auth DF]666Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.160.4750
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Find proteins for Q38ET1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
ms54S [auth DG]631Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.5.1790
UniProt
Find proteins for Q57ZP8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
ms55T [auth DH]581Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.3.5240
UniProt
Find proteins for Q580V1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
ms57U [auth DJ]396Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.2080
UniProt
Find proteins for Q584U8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
ms58V [auth DK]324Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.3840
UniProt
Find proteins for Q38BP1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
ms67W [auth DT]247Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.4930
UniProt
Find proteins for Q586G5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
ms69X [auth DV]183Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.4550
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
ms70Y [auth DW]179Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_XI11660
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
ms71Z [auth DX]169Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.2920
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
ms72AA [auth DY]163Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.7.3240
UniProt
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
uS3mBA [auth CC]74Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: MURF5
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
uS55mCA [auth CE]435Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.0530
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
bS6mDA [auth CF]160Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.4850
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
uS8mEA [auth CH]282Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.389.0130
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
uS9mFA [auth CI]443Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.3110
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
uS10mGA [auth CJ]817Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.5.4040
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
uS11mHA [auth CK]326Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.406.0510
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
uS12IA [auth CL]87Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: RPS12
UniProt
Find proteins for A0A0E3J9R6 (Trypanosoma vivax)
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
uS14mJA [auth CN]166Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.1430
UniProt
Find proteins for Q580I0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
uS15mKA [auth CO]429Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TB927.1.1200
UniProt
Find proteins for Q4GZ99 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
bS16mLA [auth CP]188Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.02.5670
UniProt
Find proteins for Q384N9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
uS17mMA [auth CQ]307Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.211.2580
UniProt
Find proteins for Q38DP8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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UniProt GroupQ38DP8
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
bS18mNA [auth CR]320Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.6k15.3900
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
uS19mOA [auth CS]244Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.2180
UniProt
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
bS12mPA [auth CU]193Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.3.4130
UniProt
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
mt-IF-3QA [auth CZ]360Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VII1040
UniProt
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
mS22RA [auth Ca]602Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.211.2430
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
mS23SA [auth Cb]324Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.5.1510
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
mS26TA [auth Cd]440Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.211.3000
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
mS29UA [auth Cg]498Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.1250
UniProt
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
mS33VA [auth Ci]181Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.3.770
UniProt
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
mS34WA [auth Cj]257Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.5280
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
mS35XA [auth Ck]874Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.47.0024
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
mS37YA [auth Cm]215Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.6600
UniProt
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
mS38ZA [auth Cn]250Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.7.630
UniProt
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
ms34AB [auth Cp]187Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.26.0750
UniProt
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
ms42BB [auth Cq]263Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TEOVI_000558800
EC: 1.15.1.1
UniProt
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
mS43CB [auth Cr]439Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.4.3690
UniProt
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
mS47DB [auth Cv]1,211Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.1910
EC: 3.1.2.4
UniProt
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
UNKFB [auth UO]5Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
UNKGB [auth UP],
WE [auth UW]		7Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
UNKHB [auth UQ]32Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
UNKIB [auth UR],
VE [auth UV],
XE [auth UX]		8Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
UNKJB [auth US]54Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
UNKKB [auth UT]44Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
bL27mLB [auth A0]185Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TEOVI_000532300
UniProt
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
bL28mMB [auth A1]241Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.4040
UniProt
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
uL29mNB [auth A2]471Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.160.5240
UniProt
Find proteins for Q38EM7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
uL30mOB [auth A3]218Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_IX4520
UniProt
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
bL31mPB [auth A4]183Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.6k15.1920
UniProt
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
bL32mQB [auth A5]80Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.4.2330
UniProt
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
bL33mRB [auth A6]114Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.4.1810
UniProt
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
bL35mSB [auth A8]181Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_X2260
UniProt
Find proteins for D0A1K1 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
bL36mTB [auth A9]184Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_IV4820
UniProt
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
uL3mUB [auth AE]473Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.3.5610
UniProt
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
uL4mVB [auth AF]459Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TEOVI_000582800
UniProt
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
bL9mWB [auth AI]263Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.5.3410
UniProt
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
uL10mXB [auth AJ]177Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_V3970
UniProt
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
uL11mYB [auth AK]342Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.2.4740, Tb927.2.4890
UniProt
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13, putativeZB [auth AN]202Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.4.1070
UniProt
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
uL15mAC [auth AP]374Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.5.3980
UniProt
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16, putativeBC [auth AQ]167Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.7.3960
UniProt
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17, putativeCC [auth AR]301Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.5860
UniProt
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Entity ID: 82
MoleculeChains Sequence LengthOrganismDetailsImage
bL19mDC [auth AT]144Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TB927.1.1210
UniProt
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
bL20mEC [auth AU]213Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.1930
UniProt
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Entity ID: 84
MoleculeChains Sequence LengthOrganismDetailsImage
bL21mFC [auth AV]188Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VII4650
UniProt
Find proteins for C9ZT11 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 85
MoleculeChains Sequence LengthOrganismDetailsImage
uL22mGC [auth AW]278Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VII3160
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Entity ID: 86
MoleculeChains Sequence LengthOrganismDetailsImage
uL23mHC [auth AX]246Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.03.0260
UniProt
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Entity ID: 87
MoleculeChains Sequence LengthOrganismDetailsImage
uL24mIC [auth AY]378Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_III1550
UniProt
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Entity ID: 88
MoleculeChains Sequence LengthOrganismDetailsImage
mL38JC [auth Ab]507Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.6620
UniProt
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Entity ID: 89
MoleculeChains Sequence LengthOrganismDetailsImage
mL40KC [auth Ad]289Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_X14530
UniProt
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Entity ID: 90
MoleculeChains Sequence LengthOrganismDetailsImage
mL41LC [auth Ae]197Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_XI11060
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Entity ID: 91
MoleculeChains Sequence LengthOrganismDetailsImage
mL42MC [auth Af]189Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.1840
UniProt
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Entity ID: 92
MoleculeChains Sequence LengthOrganismDetailsImage
mL43NC [auth Ag]260Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.4.4600
UniProt
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Entity ID: 93
MoleculeChains Sequence LengthOrganismDetailsImage
mL46OC [auth Aj]296Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VII5370
UniProt
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Entity ID: 94
MoleculeChains Sequence LengthOrganismDetailsImage
mL49PC [auth Al]218Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.5.3110
UniProt
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Entity ID: 95
MoleculeChains Sequence LengthOrganismDetailsImage
mL52QC [auth Ao]259Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.02.2250
UniProt
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Entity ID: 96
MoleculeChains Sequence LengthOrganismDetailsImage
mL53RC [auth Ap]309Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.7.2990, Tb927.7.3030
UniProt
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Entity ID: 97
MoleculeChains Sequence LengthOrganismDetailsImage
mL63SC [auth At]154Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VII8230
UniProt
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Entity ID: 98
MoleculeChains Sequence LengthOrganismDetailsImage
mL68TC [auth Av]242Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.3500
UniProt
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Entity ID: 99
MoleculeChains Sequence LengthOrganismDetailsImage
bL12mUC [auth AB]56Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 100
MoleculeChains Sequence LengthOrganismDetailsImage
bL12mVC [auth AC],
WC [auth AD]		28Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 101
MoleculeChains Sequence LengthOrganismDetailsImage
bL12mXC [auth AG]27Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 103
MoleculeChains Sequence LengthOrganismDetailsImage
mL67ZC [auth BA]831Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_XI1730
UniProt
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Entity ID: 104
MoleculeChains Sequence LengthOrganismDetailsImage
mL68AD [auth BB]541Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.7650
UniProt
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Entity ID: 105
MoleculeChains Sequence LengthOrganismDetailsImage
mL69BD [auth BC]523Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.2010
UniProt
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Entity ID: 106
MoleculeChains Sequence LengthOrganismDetailsImage
mL70CD [auth BD]547Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VI3990
UniProt
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Entity ID: 107
MoleculeChains Sequence LengthOrganismDetailsImage
mL71DD [auth BE]449Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.7.3460
UniProt
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Entity ID: 108
MoleculeChains Sequence LengthOrganismDetailsImage
mL72ED [auth BF]426Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VI3710
UniProt
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Entity ID: 109
MoleculeChains Sequence LengthOrganismDetailsImage
mL73FD [auth BG]378Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.7.6800
UniProt
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Entity ID: 110
MoleculeChains Sequence LengthOrganismDetailsImage
mL74GD [auth BH]349Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.6k15.3290
UniProt
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Entity ID: 111
MoleculeChains Sequence LengthOrganismDetailsImage
mL75HD [auth BI]343Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.7960
UniProt
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Entity ID: 112
MoleculeChains Sequence LengthOrganismDetailsImage
mL76ID [auth BJ]333Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.2340
UniProt
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Entity ID: 113
MoleculeChains Sequence LengthOrganismDetailsImage
mL77JD [auth BK]386Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VI2240
UniProt
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Entity ID: 114
MoleculeChains Sequence LengthOrganismDetailsImage
mL78KD [auth BL]312Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_X13360
UniProt
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Entity ID: 115
MoleculeChains Sequence LengthOrganismDetailsImage
mL79LD [auth BM]283Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.7140
UniProt
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Entity ID: 116
MoleculeChains Sequence LengthOrganismDetailsImage
mL80MD [auth BN]302Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.1440
UniProt
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Entity ID: 117
MoleculeChains Sequence LengthOrganismDetailsImage
mL81ND [auth BO]262Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_XI6240
UniProt
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Entity ID: 118
MoleculeChains Sequence LengthOrganismDetailsImage
mL82OD [auth BP]266Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_X19420
UniProt
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Entity ID: 119
MoleculeChains Sequence LengthOrganismDetailsImage
mL83PD [auth BQ]231Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.7.3430
EC: 5.2.1.8
UniProt
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Entity ID: 120
MoleculeChains Sequence LengthOrganismDetailsImage
mL84QD [auth BR]205Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.4080
UniProt
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Entity ID: 121
MoleculeChains Sequence LengthOrganismDetailsImage
mL85RD [auth BS]160Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.160.2250
UniProt
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Entity ID: 122
MoleculeChains Sequence LengthOrganismDetailsImage
mL86SD [auth BT]191Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_V5660
UniProt
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Entity ID: 123
MoleculeChains Sequence LengthOrganismDetailsImage
mL87TD [auth BU]185Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_XI9190
UniProt
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Entity ID: 124
MoleculeChains Sequence LengthOrganismDetailsImage
mL88UD [auth BV]190Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VIII1510
UniProt
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Entity ID: 125
MoleculeChains Sequence LengthOrganismDetailsImage
mL89VD [auth BW]188Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.3.820
UniProt
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Entity ID: 126
MoleculeChains Sequence LengthOrganismDetailsImage
mL90WD [auth BX]190Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.1700
UniProt
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Entity ID: 127
MoleculeChains Sequence LengthOrganismDetailsImage
mS91XD [auth BY]172Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.3.5300
UniProt
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Entity ID: 128
MoleculeChains Sequence LengthOrganismDetailsImage
mL92YD [auth BZ]190Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.1215
EC: 5.2.1.8
UniProt
Find proteins for Q383Y4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 129
MoleculeChains Sequence LengthOrganismDetailsImage
mL93ZD [auth Ba]139Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_X13710
UniProt
Find proteins for D0A4T0 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 130
MoleculeChains Sequence LengthOrganismDetailsImage
mL94AE [auth Bb]162Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.160.5050
UniProt
Find proteins for Q38EP7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 131
MoleculeChains Sequence LengthOrganismDetailsImage
mL95BE [auth Bc]146Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.26.0585
UniProt
Find proteins for Q389K3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 132
MoleculeChains Sequence LengthOrganismDetailsImage
mL96CE [auth Bd]144Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.6285
UniProt
Find proteins for Q381W9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 133
MoleculeChains Sequence LengthOrganismDetailsImage
mL97DE [auth Be]113Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.61.3115
UniProt
Find proteins for Q388L8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 134
MoleculeChains Sequence LengthOrganismDetailsImage
mL98EE [auth Bf]113Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.61.3155
UniProt
Find proteins for Q388M2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 135
MoleculeChains Sequence LengthOrganismDetailsImage
mL99FE [auth Bg]105Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.2.2590
UniProt
Find proteins for Q587H8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 136
MoleculeChains Sequence LengthOrganismDetailsImage
mL100GE [auth Bh]92Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TEOVI_000790200
UniProt
Find proteins for A0A1G4HYZ0 (Trypanosoma equiperdum)
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Entity ID: 137
MoleculeChains Sequence LengthOrganismDetailsImage
UNKHE [auth UA]46Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 138
MoleculeChains Sequence LengthOrganismDetailsImage
UNKIE [auth UB]40Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 139
MoleculeChains Sequence LengthOrganismDetailsImage
UNKJE [auth UC],
OE [auth UH]		12Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 140
MoleculeChains Sequence LengthOrganismDetailsImage
UNKKE [auth UD]177Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 141
MoleculeChains Sequence LengthOrganismDetailsImage
UNKLE [auth UE]22Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 142
MoleculeChains Sequence LengthOrganismDetailsImage
UNKME [auth UF],
NE [auth UG],
TE [auth UN]		24Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 143
MoleculeChains Sequence LengthOrganismDetailsImage
UNKPE [auth UI]17Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 144
MoleculeChains Sequence LengthOrganismDetailsImage
UNKQE [auth UK]10Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 145
MoleculeChains Sequence LengthOrganismDetailsImage
UNKRE [auth UL]15Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 146
MoleculeChains Sequence LengthOrganismDetailsImage
UNKSE [auth UM]6Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 147
MoleculeChains Sequence LengthOrganismDetailsImage
UNKUE [auth UU]11Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 57
MoleculeChains LengthOrganismImage
9s rRNAEB [auth CA]621Trypanosoma brucei brucei
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Entity ID: 102
MoleculeChains LengthOrganismImage
12S rRNAYC [auth AA]1,179Trypanosoma brucei brucei
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Small Molecules
Ligands 8 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAD
Query on NAD
Download Ideal Coordinates CCD File 
YG [auth Av]NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
GTP
Query on GTP
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GF [auth Cg]GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
UTP
Query on UTP
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CF [auth DJ]URIDINE 5'-TRIPHOSPHATE
C9 H15 N2 O15 P3
PGAVKCOVUIYSFO-XVFCMESISA-N
SPM
Query on SPM
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VG [auth CA]SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
SPD
Query on SPD
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SG [auth CA],
TG [auth CA],
UG [auth CA],
ZE [auth DL]		SPERMIDINE
C7 H19 N3
ATHGHQPFGPMSJY-UHFFFAOYSA-N
SER
Query on SER
Download Ideal Coordinates CCD File 
KH [auth UB]SERINE
C3 H7 N O3
MTCFGRXMJLQNBG-REOHCLBHSA-N
ZN
Query on ZN
Download Ideal Coordinates CCD File 
AF [auth DS]
BF [auth DS]
GH [auth BX]
HH [auth BX]
IF [auth Cr]
AF [auth DS],
BF [auth DS],
GH [auth BX],
HH [auth BX],
IF [auth Cr],
IH [auth Be],
JH [auth Bh],
WG [auth A5],
XG [auth A9],
YE [auth DA]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
AG [auth CA]
AH [auth AA]
BG [auth CA]
BH [auth AA]
CG [auth CA]
AG [auth CA],
AH [auth AA],
BG [auth CA],
BH [auth AA],
CG [auth CA],
CH [auth AA],
DF [auth CO],
DG [auth CA],
DH [auth AA],
EF [auth CQ],
EG [auth CA],
EH [auth AA],
FF [auth Ca],
FG [auth CA],
FH [auth AA],
GG [auth CA],
HF [auth Cg],
HG [auth CA],
IG [auth CA],
JF [auth Cv],
JG [auth CA],
KF [auth CA],
KG [auth CA],
LF [auth CA],
LG [auth CA],
MF [auth CA],
MG [auth CA],
NF [auth CA],
NG [auth CA],
OF [auth CA],
OG [auth CA],
PF [auth CA],
PG [auth CA],
QF [auth CA],
QG [auth CA],
RF [auth CA],
RG [auth CA],
SF [auth CA],
TF [auth CA],
UF [auth CA],
VF [auth CA],
WF [auth CA],
XF [auth CA],
YF [auth CA],
ZF [auth CA],
ZG [auth AA]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland--

Revision History  (Full details and data files)

  • Version 1.0: 2018-10-03
    Type: Initial release
  • Version 1.1: 2018-10-24
    Changes: Advisory, Data collection, Derived calculations
  • Version 1.2: 2018-11-07
    Changes: Data collection, Database references
  • Version 1.3: 2024-11-13
    Changes: Data collection, Database references, Derived calculations, Structure summary