6GRL | pdb_00006grl

Structure of imine reductase (apo form) at 1.6 A resolution from Saccharomonospora xinjiangensis

PDB DOI: https://doi.org/10.2210/pdb6GRL/pdb

Classification: OXIDOREDUCTASE
Organism(s): Saccharomonospora xinjiangensis XJ-54
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-06-11 Released: 2019-06-19
Deposition Author(s): Hasan, M., Gand, M., Logan, D.T., Hoehne, M.
Funding Organization(s): European Union

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.216 (Depositor), 0.218 (DCC)
R-Value Work:
0.193 (Depositor), 0.194 (DCC)
R-Value Observed:
0.194 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Structure of imine reductase (apo form) at 1.6 A resolution from Saccharomonospora xinjiangensis

Hasan, M., Gand, M., Logan, D.T., Hoehne, M.

To be published.

Macromolecule Content

Total Structure Weight: 32.14 kDa
Atom Count: 2,437
Modeled Residue Count: 287
Deposited Residue Count: 305
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase	A	305	Saccharomonospora xinjiangensis XJ-54	Mutation(s): 0 Gene Names: SacxiDRAFT_0617
UniProt
Find proteins for I0UYD6 (Saccharomonospora xinjiangensis XJ-54) Explore I0UYD6 Go to UniProtKB: I0UYD6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	I0UYD6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.216 (Depositor), 0.218 (DCC)
R-Value Work: 0.193 (Depositor), 0.194 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 141.184	α = 90
b = 35.774	β = 91.94
c = 53.05	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2019-06-19

Deposition Author(s):

Funding Organization	Location	Grant Number
European Union	Germany	ECOST-STSM-CM1303-040515-058745

Revision History (Full details and data files)

Version 1.0: 2019-06-19
Type: Initial release
Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.