6GRL | pdb_00006grl

Structure of imine reductase (apo form) at 1.6 A resolution from Saccharomonospora xinjiangensis

• PDB DOI: https://doi.org/10.2210/pdb6GRL/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Saccharomonospora xinjiangensis XJ-54
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2018-06-11 Released: 2019-06-19 
• Deposition Author(s): Hasan, M., Gand, M., Logan, D.T., Hoehne, M.
• Funding Organization(s): European Union

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free: 
  0.216 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.193 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.194 (Depositor) 

Starting Model: experimental

Literature

Structure of imine reductase (apo form) at 1.6 A resolution from Saccharomonospora xinjiangensis

Hasan, M., Gand, M., Logan, D.T., Hoehne, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 32.14 kDa 
• Atom Count: 2,437 
• Modeled Residue Count: 287 
• Deposited Residue Count: 305 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase	A	305	Saccharomonospora xinjiangensis XJ-54	Mutation(s): 0  Gene Names: SacxiDRAFT_0617
UniProt
Find proteins for I0UYD6 (Saccharomonospora xinjiangensis XJ-54) Explore I0UYD6  Go to UniProtKB:  I0UYD6

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.60 Å
• R-Value Free:  0.216 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.193 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.194 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 141.184	α = 90
b = 35.774	β = 91.94
c = 53.05	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2019-06-19 
Deposition Author(s): Hasan, M., Gand, M., Logan, D.T., Hoehne, M.

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Funding Organization	Location	Grant Number
European Union	Germany	ECOST-STSM-CM1303-040515-058745

Revision History  

• Version 1.0: 2019-06-19
  Type: Initial release
  
• Version 1.1: 2024-01-17
  Changes: Data collection, Database references, Refinement description