Discovery of an Unexpected Similarity in Ligand Binding Between BRD4 and PPARgamma
Humbeck, L., Pretzel, J., Spitzer, S., Koch, O.(2019) ChemRxiv 
Experimental Data Snapshot
Starting Model: experimental
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(2019) ChemRxiv 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Bromodomain-containing protein 4 | 127 | Homo sapiens | Mutation(s): 1  Gene Names: BRD4, HUNK1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60885 (Homo sapiens) Explore O60885  Go to UniProtKB:  O60885 | |||||
PHAROS:  O60885 GTEx:  ENSG00000141867  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60885 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EGN (Subject of Investigation/LOI) Query on EGN | B [auth A] | 4-[2-(4-cyclohexylpiperazin-4-ium-1-yl)-2-oxidanylidene-ethyl]sulfanyl-1-ethyl-quinolin-2-one C23 H32 N3 O2 S ZOILQSINXFCIAF-UHFFFAOYSA-O | |||
GOL Query on GOL | G [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
FMT Query on FMT | C [auth A], D [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N | |||
NA Query on NA | E [auth A], F [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 34.482 | α = 90 |
b = 46.749 | β = 90 |
c = 78.347 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Aimless | data scaling |
Coot | model building |
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation | Germany | SPP 1736 |
German Federal Ministry for Education and Research (BMBF) | Germany | BMBF Grant 1316053 |