6FN6 | pdb_00006fn6

Modifying region (DH-ER-KR) of an insect fatty acid synthase (FAS)

PDB DOI: https://doi.org/10.2210/pdb6FN6/pdb

Classification: TRANSFERASE
Organism(s): Drosophila melanogaster
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2018-02-02 Released: 2019-03-13
Deposition Author(s): Benning, F.M.C., Bukhari, H.S.T., Jakob, R.P., Maier, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.255 (Depositor), 0.253 (DCC)
R-Value Work:
0.221 (Depositor), 0.223 (DCC)
R-Value Observed:
0.222 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6FN6

This is version 1.1 of the entry. See complete history.

Literature

Modifying region (DH-ER-KR) of an insect fatty acid synthase (FAS)

Benning, F.M.C., Bukhari, H.S.T., Jakob, R.P., Maier, T.

To be published.

Macromolecule Content

Total Structure Weight: 259.36 kDa
Atom Count: 17,114
Modeled Residue Count: 2,182
Deposited Residue Count: 2,354
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fatty acid synthase 1, isoform A	A, B	1,177	Drosophila melanogaster	Mutation(s): 0 Gene Names: FASN1, anon-EST:Posey235, anon-EST:Posey43, anon-WO0138581.1, BcDNA:GH07626, dFAS, DM_7295848, Dmel\CG3523, FAS, FAS[CG3523]... FASN1, anon-EST:Posey235, anon-EST:Posey43, anon-WO0138581.1, BcDNA:GH07626, dFAS, DM_7295848, Dmel\CG3523, FAS, FAS[CG3523], FASN, FASN[CG3523], Fatty acid synthase, CG3523, Dmel_CG3523 EC: 1.1.1.100 (PDB Primary Data), 1.3.1.10 (PDB Primary Data), 2.3.1.38 (PDB Primary Data), 2.3.1.39 (PDB Primary Data), 2.3.1.41 (PDB Primary Data), 2.3.1.85 (PDB Primary Data), 3.1.2.14 (PDB Primary Data), 4.2.1.59 (PDB Primary Data), 1.3.1.39 (UniProt)
UniProt
Find proteins for Q9VQL7 (Drosophila melanogaster) Explore Q9VQL7 Go to UniProtKB: Q9VQL7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9VQL7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
BR Query on BR Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain F [auth B] MOL2 format, chain C [auth A] MOL2 format, chain F [auth B] mmCIF format, chain C [auth A] mmCIF format, chain F [auth B]	C [auth A], F [auth B]	BROMIDE ION Br CPELXLSAUQHCOX-UHFFFAOYSA-M		Interactions Focus chain C [auth A] Focus chain F [auth B] Interactions & Density Focus chain C [auth A] Focus chain F [auth B]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain G [auth B] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain G [auth B] mmCIF format, chain D [auth A] mmCIF format, chain E [auth A] mmCIF format, chain G [auth B]	D [auth A], E [auth A], G [auth B]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain E [auth A] Focus chain G [auth B] Interactions & Density Focus chain D [auth A] Focus chain E [auth A] Focus chain G [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.255 (Depositor), 0.253 (DCC)
R-Value Work: 0.221 (Depositor), 0.223 (DCC)
R-Value Observed: 0.222 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.448	α = 90
b = 174.149	β = 90
c = 194.454	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2019-03-13

Deposition Author(s):

Benning, F.M.C.

Bukhari, H.S.T.

Revision History (Full details and data files)

Version 1.0: 2019-03-13
Type: Initial release
Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.