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 6FEJ | pdb_00006fej

Anabaena Apo-C-Terminal Domain Homolog Protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 
    0.292 (Depositor), 0.272 (DCC) 
  • R-Value Work: 
    0.241 (Depositor), 0.248 (DCC) 
  • R-Value Observed: 
    0.246 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6FEJ

This is version 1.3 of the entry. See complete history. 

Literature

Structural rearrangements in the C-terminal domain homolog of Orange Carotenoid Protein are crucial for carotenoid transfer.

Harris, D., Wilson, A., Muzzopappa, F., Sluchanko, N.N., Friedrich, T., Maksimov, E.G., Kirilovsky, D., Adir, N.

(2018) Commun Biol 1: 125-125

  • DOI: https://doi.org/10.1038/s42003-018-0132-5
  • Primary Citation Related Structures: 
    6FEJ

  • PubMed Abstract: 

    A recently reported family of soluble cyanobacterial carotenoproteins, homologs of the C-terminal domain (CTDH) of the photoprotective Orange Carotenoid Protein, is suggested to mediate carotenoid transfer from the thylakoid membrane to the Helical Carotenoid Proteins, which are paralogs of the N-terminal domain of the OCP. Here we present the three-dimensional structure of a carotenoid-free CTDH variant from Anabaena ( Nostoc ) PCC 7120. This CTDH contains a cysteine residue at position 103. Two dimer-forming interfaces were identified, one stabilized by a disulfide bond between monomers and the second between each monomer's β-sheets, both compatible with small-angle X-ray scattering data and likely representing intermediates of carotenoid transfer processes. The crystal structure revealed a major positional change of the C-terminal tail. Further mutational analysis revealed the importance of the C-terminal tail in both carotenoid uptake and delivery. These results have allowed us to suggest a detailed model for carotenoid transfer via these soluble proteins.


  • Organizational Affiliation: 
    • Schulich Faculty of Chemistry, Technion, 3200003, Haifa, Israel.

Macromolecule Content 

  • Total Structure Weight: 26.77 kDa 
  • Atom Count: 1,855 
  • Modeled Residue Count: 242 
  • Deposited Residue Count: 248 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
All4940 protein
A, B
124Nostoc sp. PCC 7120 = FACHB-418Mutation(s): 0 
Gene Names: all4940
UniProt
Find proteins for A0ACD6B996 (Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576))
Explore A0ACD6B996 
Go to UniProtKB:  A0ACD6B996
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0ACD6B996
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free:  0.292 (Depositor), 0.272 (DCC) 
  • R-Value Work:  0.241 (Depositor), 0.248 (DCC) 
  • R-Value Observed: 0.246 (Depositor) 
Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.08α = 90
b = 81.08β = 90
c = 162.943γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
iMOSFLMdata reduction
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
IsraelISF 843/16

Revision History  (Full details and data files)

  • Version 1.0: 2018-07-18
    Type: Initial release
  • Version 1.1: 2019-10-09
    Changes: Data collection, Database references
  • Version 1.2: 2024-01-17
    Changes: Data collection, Database references, Refinement description
  • Version 1.3: 2024-10-23
    Changes: Structure summary