6EM9 | pdb_00006em9

S.aureus ClpC resting state, asymmetric map


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 6EM9

This is version 1.3 of the entry. See complete history

Literature

Regulatory coiled-coil domains promote head-to-head assemblies of AAA+ chaperones essential for tunable activity control.

Carroni, M.Franke, K.B.Maurer, M.Jager, J.Hantke, I.Gloge, F.Linder, D.Gremer, S.Turgay, K.Bukau, B.Mogk, A.

(2017) Elife 6

  • DOI: https://doi.org/10.7554/eLife.30120
  • Primary Citation Related Structures: 
    6EM8, 6EM9, 6EMW

  • PubMed Abstract: 

    Ring-forming AAA+ chaperones exert ATP-fueled substrate unfolding by threading through a central pore. This activity is potentially harmful requiring mechanisms for tight repression and substrate-specific activation. The AAA+ chaperone ClpC with the peptidase ClpP forms a bacterial protease essential to virulence and stress resistance. The adaptor MecA activates ClpC by targeting substrates and stimulating ClpC ATPase activity. We show how ClpC is repressed in its ground state by determining ClpC cryo-EM structures with and without MecA. ClpC forms large two-helical assemblies that associate via head-to-head contacts between coiled-coil middle domains (MDs). MecA converts this resting state to an active planar ring structure by binding to MD interaction sites. Loss of ClpC repression in MD mutants causes constitutive activation and severe cellular toxicity. These findings unravel an unexpected regulatory concept executed by coiled-coil MDs to tightly control AAA+ chaperone activity.


  • Organizational Affiliation
    • Swedish Cryo-EM Facility, Science for Life Laboratory Stockholm University, Solna, Sweden.

Macromolecule Content 

  • Total Structure Weight: 912 kDa 
  • Atom Count: 25,512 
  • Modeled Residue Count: 6,378 
  • Deposited Residue Count: 8,180 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ATP-dependent Clp protease ATP-binding subunit ClpC818Staphylococcus aureus RF122Mutation(s): 0 
Gene Names: clpCSAB0475
UniProt
Find proteins for Q2YSD6 (Staphylococcus aureus (strain bovine RF122 / ET3-1))
Explore Q2YSD6 
Go to UniProtKB:  Q2YSD6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2YSD6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2.6
MODEL REFINEMENTPHENIX
MODEL REFINEMENTRosetta

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Germany--

Revision History  (Full details and data files)

  • Version 1.0: 2017-12-27
    Type: Initial release
  • Version 1.1: 2018-10-03
    Changes: Data collection, Other
  • Version 1.2: 2018-11-28
    Changes: Data collection, Database references
  • Version 1.3: 2024-05-15
    Changes: Data collection, Database references