6EKM | pdb_00006ekm

Crystal structure of mammalian Rev7 in complex with human Rev3 second binding site

PDB DOI: https://doi.org/10.2210/pdb6EKM/pdb

Classification: REPLICATION
Organism(s): Mus musculus, Homo sapiens
Expression System: Escherichia coli BL21
Mutation(s): Yes

Deposited: 2017-09-26 Released: 2018-10-10
Deposition Author(s): Huber, F., Tropia, L., Emamzadah, S., Halazonetis, T.
Funding Organization(s): Swiss National Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.76 Å
R-Value Free:
0.258 (Depositor), 0.246 (DCC)
R-Value Work:
0.230 (Depositor), 0.224 (DCC)
R-Value Observed:
0.232 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of mammalian Rev7 in complex with human Rev3

Huber, F., Tropia, L., Emamzadah, S., Halazonetis, T.

To be published.

Macromolecule Content

Total Structure Weight: 27.68 kDa
Atom Count: 1,839
Modeled Residue Count: 224
Deposited Residue Count: 239
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitotic spindle assembly checkpoint protein MAD2B	A	211	Mus musculus	Mutation(s): 5 Gene Names: Mad2l2, Mad2b, Rev7
UniProt & NIH Common Fund Data Resources
Find proteins for Q9D752 (Mus musculus) Explore Q9D752 Go to UniProtKB: Q9D752
IMPC: MGI:1919140
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9D752
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA polymerase zeta catalytic subunit	B	28	Homo sapiens	Mutation(s): 0 Gene Names: REV3L, POLZ, REV3 EC: 2.7.7.7
UniProt & NIH Common Fund Data Resources
Find proteins for O60673 (Homo sapiens) Explore O60673 Go to UniProtKB: O60673
PHAROS: O60673 GTEx: ENSG00000009413
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O60673
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.76 Å
R-Value Free: 0.258 (Depositor), 0.246 (DCC)
R-Value Work: 0.230 (Depositor), 0.224 (DCC)
R-Value Observed: 0.232 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.2	α = 90
b = 48.64	β = 90
c = 116.81	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2018-10-10

Deposition Author(s):

Halazonetis, T.

Funding Organization	Location	Grant Number
Swiss National Science Foundation	Switzerland	160322

Revision History (Full details and data files)

Version 1.0: 2018-10-10
Type: Initial release
Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.