6EBY | pdb_00006eby

Crystal structure of the MbtH-like protein FscK bound to the interface forming region of FscH adenylation domain from Thermobifida fusca

PDB DOI: https://doi.org/10.2210/pdb6EBY/pdb

Classification: PROTEIN BINDING
Organism(s): Thermobifida fusca YX
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-08-07 Released: 2019-08-21
Deposition Author(s): Bruner, S.D., Zagulyaeva, A.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free:
0.235 (Depositor), 0.237 (DCC)
R-Value Work:
0.200 (Depositor), 0.203 (DCC)
R-Value Observed:
0.203 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Comprehensive analysis of protein-protein interactions between MbtH-like protein FscK and adenylation domains in nonribosomal biosynthesis of Fuscachelins.

Bruner, S.D., Zagulyaeva, A.A.

To be published.

Macromolecule Content

Total Structure Weight: 34.77 kDa
Atom Count: 2,249
Modeled Residue Count: 262
Deposited Residue Count: 316
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Conserved protein MbtH	A, C	81	Thermobifida fusca YX	Mutation(s): 0 Gene Names: Tfu_1863
UniProt
Find proteins for Q47NS3 (Thermobifida fusca (strain YX)) Explore Q47NS3 Go to UniProtKB: Q47NS3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q47NS3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Amino acid adenylation	B, D	77	Thermobifida fusca YX	Mutation(s): 0 Gene Names: Tfu_1866
UniProt
Find proteins for Q47NS0 (Thermobifida fusca (strain YX)) Explore Q47NS0 Go to UniProtKB: Q47NS0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q47NS0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free: 0.235 (Depositor), 0.237 (DCC)
R-Value Work: 0.200 (Depositor), 0.203 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.45	α = 90
b = 58.29	β = 107.21
c = 58.7	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-08-21

Deposition Author(s):

Zagulyaeva, A.A.

Revision History (Full details and data files)

Version 1.0: 2019-08-21
Type: Initial release
Version 1.1: 2020-01-29
Changes: Derived calculations
Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.