6E55 | pdb_00006e55

1.57 Angstroem Crystal Structure of FeoA from Klebsiella pneumoniae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 
    0.193 (Depositor), 0.194 (DCC) 
  • R-Value Work: 
    0.174 (Depositor), 0.176 (DCC) 

wwPDB Validation 3D Report Full Report

Validation slider image for 6E55

This is version 1.3 of the entry. See complete history

Literature

The crystal structure of Klebsiella pneumoniae FeoA reveals a site for protein-protein interactions.

Linkous, R.O.Sestok, A.E.Smith, A.T.

(2019) Proteins 87: 897-903

  • DOI: https://doi.org/10.1002/prot.25755
  • Primary Citation Related Structures: 
    6E55

  • PubMed Abstract: 

    In order to establish infection, pathogenic bacteria must obtain essential nutrients such as iron. Under acidic and/or anaerobic conditions, most bacteria utilize the Feo system in order to acquire ferrous iron (Fe 2+ ) from their host environment. The mechanism of this process, including its regulation, remains poorly understood. In this work, we have determined the crystal structure of FeoA from the nosocomial agent Klebsiella pneumoniae (KpFeoA). Our structure reveals an SH3-like domain that mediates interactions between neighboring polypeptides via hydrophobic intercalations into a Leu-rich surface ridge. Using docking of a small peptide corresponding to a postulated FeoB partner binding site, we demonstrate that KpFeoA can assume both "open" and "closed" conformations, controlled by binding at this Leu-rich ridge. We propose a model in which a "C-shaped" clamp along the FeoA surface mediates interactions with its partner protein, FeoB. These findings are the first to demonstrate atomic-level details of FeoA-based protein-protein interactions and provide a framework for testing FeoA-FeoB interactions, which could be exploited for future antibiotic developments.


  • Organizational Affiliation
    • Department of Chemistry and Biochemistry, University of Maryland, Baltimore, Maryland.

Macromolecule Content 

  • Total Structure Weight: 61.94 kDa 
  • Atom Count: 4,543 
  • Modeled Residue Count: 480 
  • Deposited Residue Count: 540 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
FeoA protein
A, B, C, D, E
A, B, C, D, E, F
90Klebsiella pneumoniaeMutation(s): 0 
Gene Names: feoA
UniProt
Find proteins for A6TF31 (Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578))
Explore A6TF31 
Go to UniProtKB:  A6TF31
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA6TF31
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free:  0.193 (Depositor), 0.194 (DCC) 
  • R-Value Work:  0.174 (Depositor), 0.176 (DCC) 
Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.01α = 90
b = 79.01β = 90
c = 74.66γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
xia2data reduction
xia2data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-06-12
    Type: Initial release
  • Version 1.1: 2019-06-19
    Changes: Data collection, Database references
  • Version 1.2: 2019-10-23
    Changes: Data collection, Database references
  • Version 1.3: 2024-03-13
    Changes: Data collection, Database references