6DJY | pdb_00006djy

Fako virus

• PDB DOI: https://doi.org/10.2210/pdb6DJY/pdb
• EM Map EMD-7944: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Fako virus
• Mutation(s): No 


• Deposited: 2018-05-27 Released: 2019-06-05 
• Deposition Author(s): Kaelber, J.T., Jiang, W., Weaver, S.C., Auguste, A.J., Chiu, W.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Welch Foundation

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.90 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

The polymerase organization of Fako virus

Kaelber, J.T., Jiang, W., Weaver, S.C., Auguste, A.J., Chiu, W.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Hetero 240-mer - A120B60C60 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: microscopy

Macromolecule Content 

• Total Structure Weight: 434.2 kDa 
• Atom Count: 27,919 
• Modeled Residue Count: 3,499 
• Deposited Residue Count: 3,808 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Clamp protein	A	348	Fako virus	Mutation(s): 0
UniProt
Find proteins for A0A0A0UEE5 (Fako virus) Explore A0A0A0UEE5  Go to UniProtKB:  A0A0A0UEE5

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	B, C	1,202	Fako virus	Mutation(s): 0
UniProt
Find proteins for A0A0A0U7Z7 (Fako virus) Explore A0A0A0U7Z7  Go to UniProtKB:  A0A0A0U7Z7

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Turret protein	D	1,056	Fako virus	Mutation(s): 0
UniProt
Find proteins for A0A0A0U955 (Fako virus) Explore A0A0A0U955  Go to UniProtKB:  A0A0A0U955

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.90 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	jspr

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2019-06-05 
Deposition Author(s): Kaelber, J.T., Jiang, W., Weaver, S.C., Auguste, A.J., Chiu, W.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	P41GM103832
Welch Foundation	United States	Q1242

Revision History  

• Version 1.0: 2019-06-05
  Type: Initial release
  
• Version 1.1: 2020-01-08
  Changes: Author supporting evidence
• Version 1.2: 2024-03-13
  Changes: Data collection, Database references, Derived calculations