Structure of DNA polymerase III subunit beta from Borrelia burgdorferi in complex with a natural product
Conrady, D.G., Abendroth, J., Higgins, T.W., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta sliding clamp | 393 | Borreliella burgdorferi B31 | Mutation(s): 0  Gene Names: dnaN, BB_0438 | ||
UniProt | |||||
Find proteins for P33761 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)) Explore P33761  Go to UniProtKB:  P33761 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P33761 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Natural product peptide | 11 | Streptomyces | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Modified Residues 3 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MP8 Query on MP8 | C, D | L-PEPTIDE LINKING | C6 H11 N O2 | PRO | |
MVA Query on MVA | C, D | L-PEPTIDE LINKING | C6 H13 N O2 | VAL | |
NZC Query on NZC | C, D | L-PEPTIDE LINKING | C5 H11 N O3 | THR |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_002311 Query on PRD_002311 | C, D | ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY | Peptide-like / Inhibitor |
Length ( Å ) | Angle ( ˚ ) |
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a = 84.38 | α = 90 |
b = 68.29 | β = 113.7 |
c = 86.32 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHENIX | phasing |