Download MendeleySubstrate recognition by FAD in UDP-galactopyranose mutase
Wangkanont, K., Forest, K.T., Kiessling, L.L.To be published.
6D2G
Crystal structure of Corynebacterium diphtheriae UDP-galactopyranose mutase in complex with UDP-galactopyranose (open, reduced)
- PDB DOI: https://doi.org/10.2210/pdb6D2G/pdb
- Classification: ISOMERASE
- Organism(s): Corynebacterium diphtheriae
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-04-13 Released: 2019-04-17
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Science Foundation (NSF, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.203
- R-Value Work: 0.162
- R-Value Observed: 0.164
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UDP-galactopyranose mutase | 393 | Corynebacterium diphtheriae | Mutation(s): 0 Gene Names: BU167_07490 |  | |
UniProt | |||||
Find proteins for Q6NER4 (Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)) Explore Q6NER4 Go to UniProtKB: Q6NER4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6NER4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FDA Query on FDA | B [auth A] | DIHYDROFLAVINE-ADENINE DINUCLEOTIDE C27 H35 N9 O15 P2 YPZRHBJKEMOYQH-UYBVJOGSSA-N |  | ||
| GDU Query on GDU | D [auth A] | GALACTOSE-URIDINE-5'-DIPHOSPHATE C15 H24 N2 O17 P2 HSCJRCZFDFQWRP-ABVWGUQPSA-N |  | ||
| SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| IPA Query on IPA | F [auth A], G [auth A], H [auth A] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.203
- R-Value Work: 0.162
- R-Value Observed: 0.164
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 98.24 | α = 90 |
| b = 98.24 | β = 90 |
| c = 127.97 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-04-17 Deposition Author(s): Wangkanont, K., Kiessling, L.L., Forest, K.T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | R01 AI063596 |
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | R01 AI126592 |
| National Science Foundation (NSF, United States) | United States | IOS1353674 |
Revision History (Full details and data files)
- Version 1.0: 2019-04-17
Type: Initial release - Version 1.1: 2019-11-27
Changes: Author supporting evidence - Version 1.2: 2023-10-04
Changes: Data collection, Database references, Derived calculations, Refinement description
