6BWS | pdb_00006bws

Crystal structure of Efga from Methylobacterium extorquens

PDB DOI: https://doi.org/10.2210/pdb6BWS/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Methylorubrum extorquens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-12-15 Released: 2019-01-16
Deposition Author(s): Shamoo, Y., Davlieva, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free:
0.252 (Depositor), 0.254 (DCC)
R-Value Work:
0.217 (Depositor), 0.222 (DCC)
R-Value Observed:
0.219 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of Efga from Methylobacterium extorquens

Shamoo, Y., Davlieva, M.

To be published.

Macromolecule Content

Total Structure Weight: 67.85 kDa
Atom Count: 4,390
Modeled Residue Count: 548
Deposited Residue Count: 656
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycolate utilization protein	A, B, C, D	164	Methylorubrum extorquens	Mutation(s): 0 Gene Names: BV511_11735
UniProt
Find proteins for P0DX96 (Methylorubrum extorquens (strain PA1)) Explore P0DX96 Go to UniProtKB: P0DX96
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0DX96
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.252 (Depositor), 0.254 (DCC)
R-Value Work: 0.217 (Depositor), 0.222 (DCC)
R-Value Observed: 0.219 (Depositor)

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.817	α = 90
b = 72	β = 90
c = 105.176	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-01-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-01-16
Type: Initial release
Version 1.1: 2019-05-15
Changes: Author supporting evidence, Data collection
Version 1.2: 2023-10-04
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.