6BDG | pdb_00006bdg

HFQ monomer in spacegroup p6 at 1.93 angstrom resolution

PDB DOI: https://doi.org/10.2210/pdb6BDG/pdb

Classification: CHAPERONE
Organism(s): Escherichia coli S88
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-10-23 Released: 2017-11-01
Deposition Author(s): Brown, C., Zhang, K., Seo, C., Ellis, M.J., Hanniford, D.B., Junop, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.96 Å
R-Value Free:
0.233 (Depositor), 0.236 (DCC)
R-Value Work:
0.192 (Depositor), 0.194 (DCC)
R-Value Observed:
0.196 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6BDG

This is version 1.1 of the entry. See complete history.

Literature

HFQ monomer in spacegroup p6 at 1.93 angstrom resolution

Ellis, M.J., Brown, C., Zhang, K., Seo, C., Junop, M., Hanniford, D.B.

To be published.

Macromolecule Content

Total Structure Weight: 7.3 kDa
Atom Count: 545
Modeled Residue Count: 63
Deposited Residue Count: 64
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-binding protein Hfq	A	64	Escherichia coli S88	Mutation(s): 0 Gene Names: hfq, ECS88_4758
UniProt
Find proteins for P0A6X3 (Escherichia coli (strain K12)) Explore P0A6X3 Go to UniProtKB: P0A6X3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0A6X3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.96 Å
R-Value Free: 0.233 (Depositor), 0.236 (DCC)
R-Value Work: 0.192 (Depositor), 0.194 (DCC)
R-Value Observed: 0.196 (Depositor)

Space Group: P 6

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.37	α = 90
b = 61.37	β = 90
c = 28.26	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-11-01

Deposition Author(s):

Hanniford, D.B.

Revision History (Full details and data files)

Version 1.0: 2017-11-01
Type: Initial release
Version 1.1: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.