6A8W | pdb_00006a8w

Crystal structure of the FHA domain of Far9

PDB DOI: https://doi.org/10.2210/pdb6A8W/pdb

Classification: PROTEIN BINDING
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2018-07-10 Released: 2019-07-10
Deposition Author(s): Chen, M., Zhang, W.Q., Zhou, Z.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.84 Å
R-Value Free:
0.223 (Depositor), 0.224 (DCC)
R-Value Work:
0.191 (Depositor), 0.191 (DCC)
R-Value Observed:
0.194 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6A8W

This is version 1.1 of the entry. See complete history.

Literature

Topological Structure and Dynamic Assembly of the STRIPAK Complex

Chen, M., Zhou, Z.C.

To be published.

Macromolecule Content

Total Structure Weight: 15.68 kDa
Atom Count: 1,105
Modeled Residue Count: 131
Deposited Residue Count: 140
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Vacuolar protein sorting-associated protein 64	A	140	Saccharomyces cerevisiae S288C	Mutation(s): 2 Gene Names: VPS64, FAR9, YDR200C, YD9346.10C
UniProt
Find proteins for Q03944 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q03944 Go to UniProtKB: Q03944
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q03944
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.84 Å
R-Value Free: 0.223 (Depositor), 0.224 (DCC)
R-Value Work: 0.191 (Depositor), 0.191 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 31.991	α = 90
b = 59.414	β = 90
c = 64.984	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-07-10

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-07-10
Type: Initial release
Version 1.1: 2024-11-06
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.