Human Cyclophilin D Complexed with Inhibitor
Zacharchenko, T., Lian, L.Y.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptidyl-prolyl cis-trans isomerase F, mitochondrial | 165 | Homo sapiens | Mutation(s): 0  Gene Names: PPIF, CYP3 EC: 5.2.1.8 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P30405 (Homo sapiens) Explore P30405  Go to UniProtKB:  P30405 | |||||
PHAROS:  P30405 GTEx:  ENSG00000108179  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P30405 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
12P Query on 12P | G [auth A], H [auth A] | DODECAETHYLENE GLYCOL C24 H50 O13 WRZXKWFJEFFURH-UHFFFAOYSA-N | |||
PO4 Query on PO4 | I [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
EDO Query on EDO | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
NA Query on NA | J [auth A], K [auth A], L [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 57.45 | α = 90 |
b = 57.45 | β = 90 |
c = 114.91 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
MOSFLM | data reduction |
SCALA | data scaling |
PHASER | phasing |