5ZZJ | pdb_00005zzj

Crystal structure of a enzyme from Santalum album

• PDB DOI: https://doi.org/10.2210/pdb5ZZJ/pdb

• Classification: LYASE
• Organism(s): Santalum album
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-06-01 Released: 2019-06-12 
• Deposition Author(s): Han, X., Liu, W.D., Chen, C.C., Guo, R.T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.234 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.189 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.192 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of a enzyme from Santalum album

Han, X., Liu, W.D., Chen, C.C., Guo, R.T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 260.97 kDa 
• Atom Count: 17,019 
• Modeled Residue Count: 2,082 
• Deposited Residue Count: 2,276 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Santalene synthase	A, B, C, D	569	Santalum album	Mutation(s): 0  EC: 4.2.3.81 (PDB Primary Data), 4.2.3.82 (PDB Primary Data), 4.2.3.83 (PDB Primary Data)
UniProt
Find proteins for E3W202 (Santalum album) Explore E3W202  Go to UniProtKB:  E3W202

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.234 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.189 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.192 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.512	α = 90
b = 155.112	β = 90
c = 164.245	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-06-12 
Deposition Author(s): Han, X., Liu, W.D., Chen, C.C., Guo, R.T.

Revision History  

• Version 1.0: 2019-06-12
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description