5ZPV | pdb_00005zpv

Solution Structure of Thioredoxin-Like Effector Protein (TRX3) from Edwardsiella piscicida


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Trxlp, a thioredoxin-like effector from Edwardsiella piscicida inhibits cellular redox signaling and nuclear translocation of NF-kappa B.

Sayed, A.Chakraborty, S.Leung, K.Y.Sugii, S.Mok, Y.K.

(2020) Int J Biol Macromol 148: 89-101

  • DOI: https://doi.org/10.1016/j.ijbiomac.2020.01.114
  • Primary Citation Related Structures: 
    5ZPV

  • PubMed Abstract: 

    Redox signaling and homeostasis are essential for cell survival and the immune response. Peroxiredoxin (Prx) modulates the level of H 2 O 2 as a redox signal through H 2 O 2 decomposition. The redox activity of thioredoxin (Trx) is required as a reducing equivalent to regenerate Prx. Edwardsiella piscicida is an opportunistic Gram-negative enteric pathogen that secretes a novel Trx-like effector protein, ETAE_2186 (Trxlp). Trxlp has unique structural properties compared with other Trx proteins. In enzymatic and binding assays, we confirmed Trxlp to be redox-inactive due to the low reactivity and flexibility of the resolving cysteine residue, C35, at the active site motif " 31 WCXXC 35 ". We identified key residues near the active site that are critical for reactivity and flexibility of C35 by site-directed mutagenesis analysis. NMR titration experiment demonstrated prolong inhibitory interaction of Trxlp with Prx1 resulting in the repression of Prx1-mediated H 2 O 2 decomposition leading to increased ROS accumulation in infected host cells. Increased ROS in turn prevented nuclear translocation of NF-κB and inhibition of NF-κB target genes, leading to bacterial survival and enhanced replication inside host cells. Targeting Trxlp-mediated virulence promises to attenuate E. piscicida infection.


  • Organizational Affiliation
    • Department of Biological Sciences, 16 Science Drive 4, National University of Singapore, 117558, Singapore.

Macromolecule Content 

  • Total Structure Weight: 13.69 kDa 
  • Atom Count: 837 
  • Modeled Residue Count: 106 
  • Deposited Residue Count: 122 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Thioredoxin (H-type,TRX-H)122Edwardsiella piscicida EIB202Mutation(s): 0 
Gene Names: ETAE_2186

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-05-22
    Type: Initial release
  • Version 1.1: 2020-06-03
    Changes: Data collection, Database references
  • Version 1.2: 2023-06-14
    Changes: Database references, Other
  • Version 1.3: 2024-05-15
    Changes: Data collection, Database references