5ZO0 | pdb_00005zo0

Neutron structure of xylanase at pD5.4

PDB DOI: https://doi.org/10.2210/pdb5ZO0/pdb

Classification: HYDROLASE
Organism(s): Trichoderma reesei RUT C-30
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-04-12 Released: 2019-05-15
Deposition Author(s): Wan, Q., Li, Z.H.
Funding Organization(s): National Science Foundation (China)

Experimental Data Snapshot

Method: NEUTRON DIFFRACTION
Resolution: 1.65 Å
R-Value Free:
0.229 (Depositor)
R-Value Work:
0.186 (Depositor)
R-Value Observed:
0.189 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 5ZO0

This is version 1.1 of the entry. See complete history.

Literature

Neutron structure of xylanase at pD5.4

Wan, Q., Li, Z.H.

To be published.

Macromolecule Content

Total Structure Weight: 20.73 kDa
Atom Count: 1,644
Modeled Residue Count: 189
Deposited Residue Count: 189
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endo-1,4-beta-xylanase 2	A	189	Trichoderma reesei RUT C-30	Mutation(s): 0 Gene Names: xyn2, M419DRAFT_124931 EC: 3.2.1.8
UniProt
Find proteins for P36217 (Hypocrea jecorina (strain ATCC 56765 / BCRC 32924 / NRRL 11460 / Rut C-30)) Explore P36217 Go to UniProtKB: P36217
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36217
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: NEUTRON DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.229 (Depositor)
R-Value Work: 0.186 (Depositor)
R-Value Observed: 0.189 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.7	α = 90
b = 60.026	β = 90
c = 70.592	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
DENZO	data reduction
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2019-05-15

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (China)	China	31670790

Revision History (Full details and data files)

Version 1.0: 2019-05-15
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.