5Z55

NMR Solution Structure of the Kringle domain of human receptor tyrosine kinase-like orphan receptor 1 (ROR1)

• PDB DOI: https://doi.org/10.2210/pdb5Z55/pdb

• Classification: ONCOPROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-01-17 Released: 2018-05-16 
• Deposition Author(s): Ma, X., Hu, K.F.
• Funding Organization(s): National Key Research and Development Program of China, National Natural Science Foundation of China, Yunnan Provincial Science and Technology Department

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 96 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 

Literature

Backbone and side-chain chemical shift assignments of the kringle domain of human receptor tyrosine kinase-like orphan receptor 1 (ROR1).

Ma, X., Zhang, Y., Liu, B., Yang, J., Hu, K.

(2018) Biomol NMR Assign 12: 145-148

• PubMed: 29313214 
• DOI: https://doi.org/10.1007/s12104-017-9797-9
• Primary Citation of Related Structures:  
  5Z55


• PubMed Abstract: 
  

  Receptor tyrosine kinase-like orphan receptor 1 (ROR1) expresses at high level in many cancers and has been suggested as a potential therapeutic target. It was reported that the Kringle (KNG) domain of ROR1 extracellular region is involved in ROR1/ROR2 heterooligomerization. Monoantibodies that target KNG domain of ROR1 could induce apoptosis of chronic lymphocytic leukemia cells. Here we present the backbone and side chain assignments of KNG domain of ROR1, which lays a foundation for its further structural and function research.

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Organizational Affiliation: 

State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Heilongtan, Kunming, 650201, Yunnan, People's Republic of China.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 9.56 kDa 
• Atom Count: 670 
• Modelled Residue Count: 85 
• Deposited Residue Count: 85 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Inactive tyrosine-protein kinase transmembrane receptor ROR1	A	85	Homo sapiens	Mutation(s): 0  Gene Names: ROR1, NTRKR1
UniProt & NIH Common Fund Data Resources
Find proteins for Q01973 (Homo sapiens) Explore Q01973  Go to UniProtKB:  Q01973
PHAROS:  Q01973 GTEx:  ENSG00000185483

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 96 
• Conformers Submitted: 10 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-05-16 
Deposition Author(s): Ma, X., Hu, K.F.

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Funding Organization	Location	Grant Number
National Key Research and Development Program of China	China	2017YFC0906900
National Natural Science Foundation of China	China	21573258
National Natural Science Foundation of China	China	81401904
Yunnan Provincial Science and Technology Department	China	2015FA028
Yunnan Provincial Science and Technology Department	China	2015FB170

Revision History  

• Version 1.0: 2018-05-16
  Type: Initial release
  
• Version 1.1: 2023-06-14
  Changes: Data collection, Database references, Other
• Version 1.2: 2024-10-23
  Changes: Data collection, Structure summary