5YQ4 | pdb_00005yq4

Crystal structure of kelch domain of KLHL20

PDB DOI: https://doi.org/10.2210/pdb5YQ4/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-11-05 Released: 2018-11-14
Deposition Author(s): Yeh, M.C., Ho, M.C.
Funding Organization(s): Academia Sinica (Taiwan)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.58 Å
R-Value Free:
0.191 (Depositor), 0.197 (DCC)
R-Value Work:
0.163 (Depositor), 0.175 (DCC)
R-Value Observed:
0.165 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5YQ4

This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of kelch domain of KLHL20

Yeh, M.C., Ho, M.C.

To be published.

Macromolecule Content

Total Structure Weight: 32.55 kDa
Atom Count: 2,439
Modeled Residue Count: 284
Deposited Residue Count: 299
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Kelch-like protein 20	A	299	Homo sapiens	Mutation(s): 0 Gene Names: KLHL20, KLEIP
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y2M5 (Homo sapiens) Explore Q9Y2M5 Go to UniProtKB: Q9Y2M5
PHAROS: Q9Y2M5 GTEx: ENSG00000076321
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9Y2M5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.58 Å
R-Value Free: 0.191 (Depositor), 0.197 (DCC)
R-Value Work: 0.163 (Depositor), 0.175 (DCC)
R-Value Observed: 0.165 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.957	α = 90
b = 74.203	β = 90
c = 155.222	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
HKL-2000	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
BALBES	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2018-11-14

Deposition Author(s):

Funding Organization	Location	Grant Number
Academia Sinica (Taiwan)	Taiwan	AS-104-TP-B05

Revision History (Full details and data files)

Version 1.0: 2018-11-14
Type: Initial release
Version 1.1: 2024-11-20
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.