Download MendeleyCrystal structure of an aminotransferase from Mycobacterium tuberculosis
Saroj, D.C., Biswal, B.K.To be published.
5YHV
Crystal structure of an aminotransferase from Mycobacterium tuberculosis
- PDB DOI: https://doi.org/10.2210/pdb5YHV/pdb
- Classification: TRANSFERASE
- Organism(s): Mycobacterium tuberculosis H37Rv
- Expression System: Mycolicibacterium smegmatis
- Mutation(s): No
- Deposited: 2017-09-30 Released: 2018-10-10
- Funding Organization(s): Department of Biotechnology, India
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.272
- R-Value Work: 0.236
- R-Value Observed: 0.238
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Aminotransferase | 394 | Mycobacterium tuberculosis H37Rv | Mutation(s): 0 Gene Names: aspB, Rv3565 EC: 2.6.1 |  | |
UniProt | |||||
Find proteins for P96847 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P96847 Go to UniProtKB: P96847 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P96847 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | G [auth A], H [auth B], M [auth C], N [auth D] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| GLU Query on GLU | E [auth A] | GLUTAMIC ACID C5 H9 N O4 WHUUTDBJXJRKMK-VKHMYHEASA-N |  | ||
| AKG Query on AKG | J [auth B], L [auth C] | 2-OXOGLUTARIC ACID C5 H6 O5 KPGXRSRHYNQIFN-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | F [auth A], I [auth B], K [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.272
- R-Value Work: 0.236
- R-Value Observed: 0.238
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 93.277 | α = 90 |
| b = 98.224 | β = 90 |
| c = 198.774 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-10-10 Deposition Author(s): Saroj, D.C., Biswal, B.K.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Department of Biotechnology, India | India | -- |
Revision History (Full details and data files)
- Version 1.0: 2018-10-10
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description, Structure summary
