Crystal structure of Plasmodium falciparum aminopeptidase N in complex with (S)-N-hydroxy-4-methyl-2-(3-(3-methylbenzyl)ureido)pentanamide
Marapaka, A.K., Addlagatta, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
M1 family aminopeptidase | 914 | Plasmodium falciparum FcB1/Columbia | Mutation(s): 0  EC: 3.4.11 | ||
UniProt | |||||
Find proteins for O96935 (Plasmodium falciparum (isolate 3D7)) Explore O96935  Go to UniProtKB:  O96935 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O96935 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
8N3 Query on 8N3 | F [auth A] | (2R)-4-methyl-2-[(3-methylphenyl)methylcarbamoylamino]-N-oxidanyl-pentanamide C15 H23 N3 O3 XSZYRFNGBBJUNJ-CYBMUJFWSA-N | |||
GOL Query on GOL | G [auth A], H [auth A], I [auth A], J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | C [auth A], D [auth A], E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 74.436 | α = 90 |
b = 109.267 | β = 90 |
c = 112.504 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
DENZO | data collection |
SCALEPACK | data scaling |
MOLREP | model building |
PDB_EXTRACT | data extraction |
DENZO | data reduction |