5XXQ | pdb_00005xxq

Crystal structure of RBBP4: ZNF827 and its function in telomere

PDB DOI: https://doi.org/10.2210/pdb5XXQ/pdb

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2017-07-04 Released: 2018-08-08
Deposition Author(s): Sun, A., Shi, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.212 (Depositor), 0.210 (DCC)
R-Value Work:
0.172 (Depositor)
R-Value Observed:
0.174 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 5XXQ

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of RBBP4: ZNF827 and its function in telomere

Sun, A., Shi, Y.

To be published.

Macromolecule Content

Total Structure Weight: 106.28 kDa
Atom Count: 6,602
Modeled Residue Count: 780
Deposited Residue Count: 940
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone-binding protein RBBP4	A, B	456	Homo sapiens	Mutation(s): 0 Gene Names: RBBP4, RBAP48
UniProt & NIH Common Fund Data Resources
Find proteins for Q09028 (Homo sapiens) Explore Q09028 Go to UniProtKB: Q09028
PHAROS: Q09028 GTEx: ENSG00000162521
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q09028
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger protein 827	C, D	14	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q17R98 (Homo sapiens) Explore Q17R98 Go to UniProtKB: Q17R98
PHAROS: Q17R98 GTEx: ENSG00000151612
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q17R98
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.212 (Depositor), 0.210 (DCC)
R-Value Work: 0.172 (Depositor)
R-Value Observed: 0.174 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.96	α = 90
b = 59.78	β = 95.07
c = 102.56	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALA	data scaling
PDB_EXTRACT	data extraction
iMOSFLM	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2018-08-08

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-08-08
Type: Initial release
Version 1.1: 2019-12-11
Changes: Derived calculations
Version 1.2: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.