5XW7 | pdb_00005xw7

Crystal structure of the flexible tandem repeat domain of bacterial cellulose synthase subunit C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.27 Å
  • R-Value Free: 
    0.257 (Depositor), 0.257 (DCC) 
  • R-Value Work: 
    0.212 (Depositor), 0.216 (DCC) 
  • R-Value Observed: 
    0.215 (Depositor) 

wwPDB Validation 3D Report Full Report

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Literature

Crystal structure of the flexible tandem repeat domain of bacterial cellulose synthesis subunit C

Nojima, S.Fujishima, A.Kato, K.Ohuchi, K.Shimizu, N.Yonezawa, K.Tajima, K.Yao, M.

(2017) Sci Rep 7: 13018-13018

  • DOI: https://doi.org/10.1038/s41598-017-12530-0
  • Primary Citation Related Structures: 
    5XW7

  • PubMed Abstract: 

    Bacterial cellulose (BC) is synthesized and exported through the cell membrane via a large protein complex (terminal complex) that consists of three or four subunits. BcsC is a little-studied subunit considered to export BC to the extracellular matrix. It is predicted to have two domains: a tetratrico peptide repeat (TPR) domain and a β-barrelled outer membrane domain. Here we report the crystal structure of the N-terminal part of BcsC-TPR domain (Asp24-Arg272) derived from Enterobacter CJF-002. Unlike most TPR-containing proteins which have continuous TPR motifs, this structure has an extra α-helix between two clusters of TPR motifs. Five independent molecules in the crystal had three different conformations that varied at the hinge of the inserted α-helix. Such structural feature indicates that the inserted α-helix confers flexibility to the chain and changes the direction of the TPR super-helix, which was also suggested by structural analysis of BcsC-TPR (Asp24-Leu664) in solution by size exclusion chromatography-small-angle X-ray scattering. The flexibility at the α-helical hinge may play important role for exporting glucan chains.


  • Organizational Affiliation
    • Graduate school of Life Science, Hokkaido University, Sapporo, Hokkaido, 060-0810, Japan.

Macromolecule Content 

  • Total Structure Weight: 142.77 kDa 
  • Atom Count: 8,740 
  • Modeled Residue Count: 1,146 
  • Deposited Residue Count: 1,300 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cellulose synthase subunit C
A, B, C, D, E
260Enterobacter sp. CJF-002Mutation(s): 0 
Gene Names: bcsC
UniProt
Find proteins for K0J1W8 (Enterobacter sp. CJF-002)
Explore K0J1W8 
Go to UniProtKB:  K0J1W8
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupK0J1W8
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.27 Å
  • R-Value Free:  0.257 (Depositor), 0.257 (DCC) 
  • R-Value Work:  0.212 (Depositor), 0.216 (DCC) 
  • R-Value Observed: 0.215 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 115.81α = 90
b = 55.62β = 95.56
c = 165.02γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
PHENIXphasing
XDSdata reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-11-01
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Data collection, Database references