Download MendeleyCrystal structure of Xanthine-guanine phosphoribosyltransferase from Yersinia pestis
Pavithra, G.C., Ramagopal, U.A.To be published.
5XTK
Crystal structure of Xanthine-guanine phosphoribosyltransferase from Yersinia pestis
- PDB DOI: https://doi.org/10.2210/pdb5XTK/pdb
- Classification: TRANSFERASE
- Organism(s): Yersinia pestis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-06-19 Released: 2018-06-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.74 Å
- R-Value Free: 0.197
- R-Value Work: 0.166
- R-Value Observed: 0.168
Starting Model: experimental
View more details
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Xanthine phosphoribosyltransferase | 152 | Yersinia pestis | Mutation(s): 0 Gene Names: gpt, YPO3225, y0963, YP_0708 EC: 2.4.2.22 (PDB Primary Data), 2.4.2 (UniProt) |  | |
UniProt | |||||
Find proteins for Q8ZC05 (Yersinia pestis) Explore Q8ZC05 Go to UniProtKB: Q8ZC05 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ZC05 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 5GP Query on 5GP | D [auth A] | GUANOSINE-5'-MONOPHOSPHATE C10 H14 N5 O8 P RQFCJASXJCIDSX-UUOKFMHZSA-N |  | ||
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.74 Å
- R-Value Free: 0.197
- R-Value Work: 0.166
- R-Value Observed: 0.168
- Space Group: P 43 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.557 | α = 90 |
| b = 66.557 | β = 90 |
| c = 165.379 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| DENZO | data reduction |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2018-06-20 Deposition Author(s): Pavithra, G.C., Ramagopal, U.A.
Revision History (Full details and data files)
- Version 1.0: 2018-06-20
Type: Initial release - Version 1.1: 2019-10-16
Changes: Data collection - Version 1.2: 2019-10-23
Changes: Data collection - Version 1.3: 2023-11-22
Changes: Data collection, Database references, Refinement description
