Download MendeleyHigh Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin
Kumari, S., Goel, M., Gupta, R.To be published.
5XLU
High Resolution Crystal Structure of Bacillus Licheniformis Gamma Glutamyl Transpeptidase with Acivicin
- PDB DOI: https://doi.org/10.2210/pdb5XLU/pdb
- Classification: TRANSFERASE
- Organism(s): Bacillus licheniformis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-05-11 Released: 2018-05-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.205
- R-Value Work: 0.174
- R-Value Observed: 0.175
Starting Model: experimental
View more details
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Gamma glutamyl transpeptidase | 398 | Bacillus licheniformis | Mutation(s): 0 EC: 2.3.2.2 (PDB Primary Data), 3.4.19.13 (UniProt) |  | |
UniProt | |||||
Find proteins for Q65KZ6 (Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46)) Explore Q65KZ6 Go to UniProtKB: Q65KZ6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q65KZ6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Gamma glutamyl transpeptidase | 187 | Bacillus licheniformis | Mutation(s): 0 EC: 2.3.2.2 (PDB Primary Data), 3.4.19.13 (UniProt) |  | |
UniProt | |||||
Find proteins for A9YTT0 (Bacillus licheniformis) Explore A9YTT0 Go to UniProtKB: A9YTT0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9YTT0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AVN Query on AVN | D [auth B] | (2S)-AMINO[(5S)-3-CHLORO-4,5-DIHYDROISOXAZOL-5-YL]ACETIC ACID C5 H7 Cl N2 O3 QAWIHIJWNYOLBE-OKKQSCSOSA-N |  | ||
| GOL Query on GOL | C [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CA Query on CA | E [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.205
- R-Value Work: 0.174
- R-Value Observed: 0.175
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.005 | α = 90 |
| b = 85.732 | β = 90 |
| c = 124.664 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data processing |
| PHASER | model building |
Entry History
Deposition Data
- Released Date: 2018-05-16 Deposition Author(s): Kumari, S., Goel, M., Gupta, R., Pal, R.
Revision History (Full details and data files)
- Version 1.0: 2018-05-16
Type: Initial release - Version 1.1: 2018-09-19
Changes: Data collection, Database references - Version 1.2: 2023-11-22
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2024-10-23
Changes: Structure summary
