5XA6 | pdb_00005xa6

Ion channel modulation by scorpion haemolymph and its defensin ingredients uncovers origin of neurotoxins in telson formed in Paleozoic scorpion

PDB DOI: https://doi.org/10.2210/pdb5XA6/pdb

Classification: TOXIN
Organism(s): Buthus sp. IY-2001
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2017-03-11 Released: 2018-03-14
Deposition Author(s): Tian, C., Wu, Y., Meng, L., Qu, D.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 300
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Ion channel modulation by scorpion haemolymph and its defensin ingredients uncovers origin of neurotoxins in telson formed in Paleozoic scorpion

Meng, L., Qu, D., Xie, Z., Zhang, Q., Li, Y., Yang, F., Chen, Z., Li, W., Cao, Z., Tian, C., Wu, Y.

To be published.

Macromolecule Content

Total Structure Weight: 4.51 kDa
Atom Count: 311
Modeled Residue Count: 38
Deposited Residue Count: 38
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BmKDfsin3	A	38	Buthus sp. IY-2001	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for A0A384E0Y8 (Olivierus martensii) Explore A0A384E0Y8 Go to UniProtKB: A0A384E0Y8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A384E0Y8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 300
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

Deposition Data

Released Date: 2018-03-14

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-03-14
Type: Initial release
Version 1.1: 2023-06-14
Changes: Data collection, Database references, Other
Version 1.2: 2024-11-06
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.