5X6A | pdb_00005x6a

Crystal structure of an endoglucanase PMO-5

PDB DOI: https://doi.org/10.2210/pdb5X6A/pdb

Classification: HYDROLASE
Organism(s): Aspergillus fumigatus Af293
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-02-21 Released: 2018-02-21
Deposition Author(s): Shen, Q.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.166 (Depositor), 0.179 (DCC)
R-Value Work:
0.135 (Depositor), 0.146 (DCC)
R-Value Observed:
0.136 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of an endoglucanase PMO-5

Shen, Q.

To be published.

Macromolecule Content

Total Structure Weight: 48.39 kDa
Atom Count: 3,946
Modeled Residue Count: 458
Deposited Residue Count: 458
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endoglucanase, putative	A, B	229	Aspergillus fumigatus Af293	Mutation(s): 0 Gene Names: AFUA_4G07850 EC: 3.2.1 (PDB Primary Data), 1.14.99.56 (UniProt)
UniProt
Find proteins for Q4WP32 (Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)) Explore Q4WP32 Go to UniProtKB: Q4WP32
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q4WP32
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.166 (Depositor), 0.179 (DCC)
R-Value Work: 0.135 (Depositor), 0.146 (DCC)
R-Value Observed: 0.136 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.054	α = 75.55
b = 48.926	β = 88.29
c = 54.192	γ = 76.51

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data processing
AutoSol	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2018-02-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-02-21
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
Version 1.2: 2024-10-16
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.